* installing *source* package 'RcppTskit' ...
** package 'RcppTskit' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
using C++ compiler: 'g++.exe (GCC) 13.3.0'
using C++20
make[1]: Entering directory '/d/temp/2026_03_02_15_37_19_9148/Rtmpiu4Ijb/R.INSTALL46e068f9309/RcppTskit/src'
gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -ID:/RCompile/recent/R-4.4.3p/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DNDEBUG -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tskit/convert.c -o tskit/convert.o
gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -ID:/RCompile/recent/R-4.4.3p/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DNDEBUG -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tskit/core.c -o tskit/core.o
gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -ID:/RCompile/recent/R-4.4.3p/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DNDEBUG -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tskit/genotypes.c -o tskit/genotypes.o
gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -ID:/RCompile/recent/R-4.4.3p/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DNDEBUG -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tskit/haplotype_matching.c -o tskit/haplotype_matching.o
gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -ID:/RCompile/recent/R-4.4.3p/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DNDEBUG -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tskit/kastore.c -o tskit/kastore.o
tskit/kastore.c: In function 'kastore_print_state':
tskit/kastore.c:1157:32: warning: unknown conversion type character 'z' in format [-Wformat=]
1157 | fprintf(out, "num_items = %zu\n", self->num_items);
| ^
tskit/kastore.c:1157:18: warning: too many arguments for format [-Wformat-extra-args]
1157 | fprintf(out, "num_items = %zu\n", self->num_items);
| ^~~~~~~~~~~~~~~~~~~
tskit/kastore.c:1158:32: warning: unknown conversion type character 'z' in format [-Wformat=]
1158 | fprintf(out, "file_size = %zu\n", self->file_size);
| ^
tskit/kastore.c:1158:18: warning: too many arguments for format [-Wformat-extra-args]
1158 | fprintf(out, "file_size = %zu\n", self->file_size);
| ^~~~~~~~~~~~~~~~~~~
tskit/kastore.c:1165:40: warning: unknown conversion type character 'z' in format [-Wformat=]
1165 | "%.*s: type=%d, key_start=%zu, key_len=%zu, key=%p, "
| ^
tskit/kastore.c:1165:53: warning: unknown conversion type character 'z' in format [-Wformat=]
1165 | "%.*s: type=%d, key_start=%zu, key_len=%zu, key=%p, "
| ^
tskit/kastore.c:1165:62: warning: format '%p' expects argument of type 'void *', but argument 6 has type 'size_t' {aka 'long long unsigned int'} [-Wformat=]
1165 | "%.*s: type=%d, key_start=%zu, key_len=%zu, key=%p, "
| ~^
| |
| void *
| %lld
1166 | "array_start=%zu, array_len=%zu, array=%p\n",
1167 | (int) item->key_len, item->key, item->type, item->key_start, item->key_len,
| ~~~~~~~~~~~~~~~
| |
| size_t {aka long long unsigned int}
tskit/kastore.c:1165:13: warning: unknown conversion type character 'z' in format [-Wformat=]
1165 | "%.*s: type=%d, key_start=%zu, key_len=%zu, key=%p, "
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tskit/kastore.c:1166:27: note: format string is defined here
1166 | "array_start=%zu, array_len=%zu, array=%p\n",
| ^
tskit/kastore.c:1165:13: warning: unknown conversion type character 'z' in format [-Wformat=]
1165 | "%.*s: type=%d, key_start=%zu, key_len=%zu, key=%p, "
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tskit/kastore.c:1166:42: note: format string is defined here
1166 | "array_start=%zu, array_len=%zu, array=%p\n",
| ^
tskit/kastore.c:1165:13: warning: format '%p' expects argument of type 'void *', but argument 7 has type 'size_t' {aka 'long long unsigned int'} [-Wformat=]
1165 | "%.*s: type=%d, key_start=%zu, key_len=%zu, key=%p, "
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1166 | "array_start=%zu, array_len=%zu, array=%p\n",
1167 | (int) item->key_len, item->key, item->type, item->key_start, item->key_len,
| ~~~~~~~~~~~~~
| |
| size_t {aka long long unsigned int}
tskit/kastore.c:1166:53: note: format string is defined here
1166 | "array_start=%zu, array_len=%zu, array=%p\n",
| ~^
| |
| void *
| %lld
tskit/kastore.c:1165:13: warning: too many arguments for format [-Wformat-extra-args]
1165 | "%.*s: type=%d, key_start=%zu, key_len=%zu, key=%p, "
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -ID:/RCompile/recent/R-4.4.3p/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DNDEBUG -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tskit/stats.c -o tskit/stats.o
gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -ID:/RCompile/recent/R-4.4.3p/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DNDEBUG -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tskit/tables.c -o tskit/tables.o
gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -ID:/RCompile/recent/R-4.4.3p/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DNDEBUG -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tskit/trees.c -o tskit/trees.o
gcc -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -ID:/RCompile/recent/R-4.4.3p/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DNDEBUG -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tests_c.c -o tests_c.o
g++ -std=gnu++20 -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -ID:/RCompile/recent/R-4.4.3p/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DNDEBUG -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppTskit.cpp -o RcppTskit.o
g++ -std=gnu++20 -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -ID:/RCompile/recent/R-4.4.3p/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DNDEBUG -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tests.cpp -o tests.o
g++ -std=gnu++20 -I"D:/RCompile/recent/R-4.4.3p/include" -DNDEBUG -I../inst/include -I../inst/include/tskit -I../inst/include/tskit/tskit -ID:/RCompile/recent/R-4.4.3p/include -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -DNDEBUG -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -shared -s -static-libgcc -o RcppTskit.dll tmp.def tskit/convert.o tskit/core.o tskit/genotypes.o tskit/haplotype_matching.o tskit/kastore.o tskit/stats.o tskit/tables.o tskit/trees.o tests_c.o RcppTskit.o tests.o RcppExports.o -Wl,--out-implib,RcppTskit.dll.a -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.3p/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2026_03_02_15_37_19_9148/Rtmpiu4Ijb/R.INSTALL46e068f9309/RcppTskit/src'
make[1]: Entering directory '/d/temp/2026_03_02_15_37_19_9148/Rtmpiu4Ijb/R.INSTALL46e068f9309/RcppTskit/src'
make[1]: Leaving directory '/d/temp/2026_03_02_15_37_19_9148/Rtmpiu4Ijb/R.INSTALL46e068f9309/RcppTskit/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-RcppTskit/00new/RcppTskit/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'RcppTskit' as RcppTskit_0.2.0.zip
* DONE (RcppTskit)