* installing *source* package 'ProFAST' ...
** package 'ProFAST' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2025_07_02_01_50_01_21067/RtmpY50oGk/R.INSTALL29e6044792ad7/ProFAST/src'
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  "-DARMA_64BIT_WORD=1"   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c DR_removebatch.cpp -o DR_removebatch.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  "-DARMA_64BIT_WORD=1"   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  "-DARMA_64BIT_WORD=1"   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c alignExp.cpp -o alignExp.o
alignExp.cpp: In function 'Rcpp::List correct_one_gene(const Rcpp::List&, const Rcpp::List&, const Rcpp::List&, const arma::mat&, const Rcpp::List&, const arma::vec&, const arma::vec&, const arma::vec&, const arma::vec&, const arma::vec&, const int&, const double&, const bool&)':
alignExp.cpp:165:8: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  165 |   if(M != Tm.n_rows){
      |      ~~^~~~~~~~~~~~
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  "-DARMA_64BIT_WORD=1"   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c alignExps.cpp -o alignExps.o
alignExps.cpp: In function 'Rcpp::List correct_genes(const Rcpp::List&, const Rcpp::List&, const Rcpp::List&, const arma::mat&, const Rcpp::List&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const int&, const double&, const bool&)':
alignExps.cpp:254:8: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const long long unsigned int'} [-Wsign-compare]
  254 |   if(M != Tm.n_rows){
      |      ~~^~~~~~~~~~~~
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  "-DARMA_64BIT_WORD=1"   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cofast_util.cpp -o cofast_util.o
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  "-DARMA_64BIT_WORD=1"   -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c profast.cpp -o profast.o
profast.cpp: In function 'Rcpp::List profast_g_cpp(const Rcpp::List&, const Rcpp::List&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::cube&, const Rcpp::List&, const int&, const double&, const bool&, const bool&, const bool&)':
profast.cpp:406:7: warning: variable 'n' set but not used [-Wunused-but-set-variable]
  406 |   int n;
      |       ^
g++ -std=gnu++17 -shared -s -static-libgcc -o ProFAST.dll tmp.def DR_removebatch.o RcppExports.o alignExp.o alignExps.o cofast_util.o profast.o -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_07_02_01_50_01_21067/RtmpY50oGk/R.INSTALL29e6044792ad7/ProFAST/src'
make[1]: Entering directory '/d/temp/2025_07_02_01_50_01_21067/RtmpY50oGk/R.INSTALL29e6044792ad7/ProFAST/src'
make[1]: Leaving directory '/d/temp/2025_07_02_01_50_01_21067/RtmpY50oGk/R.INSTALL29e6044792ad7/ProFAST/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-ProFAST/00new/ProFAST/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'ProFAST' as ProFAST_1.6.zip
* DONE (ProFAST)