- using R version 4.4.3 (2025-02-28 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'PoweREST/DESCRIPTION' ... OK
- this is package 'PoweREST' version '0.1.1'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'PoweREST' can be installed ... OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [9s] OK
- checking whether the package can be loaded with stated dependencies ... [8s] OK
- checking whether the package can be unloaded cleanly ... [8s] OK
- checking whether the namespace can be loaded with stated dependencies ... [8s] OK
- checking whether the namespace can be unloaded cleanly ... [9s] OK
- checking loading without being on the library search path ... [9s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [21s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... [1s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [10s] ERROR
Running examples in 'PoweREST-Ex.R' failed
The error most likely occurred in:
> ### Name: fit_XGBoost
> ### Title: Fit with XGBoost
> ### Aliases: fit_XGBoost
>
> ### ** Examples
>
> data(power_example)
> # Fit the local power surface of avg_log2FC_abs between 1 and 2
> avg_log2FC_abs_1_2<-dplyr::filter(power_example,avg_log2FC_abs>1 & avg_log2FC_abs<2)
> # Fit the model
> bst<-fit_XGBoost(power_example$power,avg_log2FC=power_example$avg_log2FC_abs,
+ avg_PCT=power_example$mean_pct,replicates=power_example$sample_size)
Warning in throw_err_or_depr_msg("Passed unrecognized parameters: ", paste(head(names_unrecognized), :
Passed unrecognized parameters: max.depth, verbose. This warning will become an error in a future version.
Warning in throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'data' has been renamed to 'x'. This warning will become an error in a future version.
Warning in throw_err_or_depr_msg("Parameter '", match_old, "' has been renamed to '", :
Parameter 'eta' has been renamed to 'learning_rate'. This warning will become an error in a future version.
Error in xgboost::xgboost(data = dtrain, max.depth = max.depth, eta = eta, :
argument "y" is missing, with no default
Calls: fit_XGBoost ... <Anonymous> -> process.y.margin.and.objective -> NROW
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [12s] OK
- checking PDF version of manual ... [22s] OK
- checking HTML version of manual ... [2s] OK
- DONE
Status: 1 ERROR