* installing *source* package 'NAIR' ...
** package 'NAIR' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2025_09_05_01_50_00_10480/Rtmpglhwol/R.INSTALL2eb1c4e04362c/NAIR/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from RcppExports.cpp:4:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dropDegreeZero.cpp -o dropDegreeZero.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from dropDegreeZero.cpp:18:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hamAdjacencyMatSparse.cpp -o hamAdjacencyMatSparse.o
In file included from hamAdjacencyMatSparse.cpp:20:
dropDegreeZero.h:4: warning: "ARMA_64BIT_WORD" redefined
4 | #define ARMA_64BIT_WORD 1
|
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/legacy/armadillo:96,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:80,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from hamAdjacencyMatSparse.cpp:18:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/legacy/armadillo_bits/compiler_setup.hpp:88: note: this is the location of the previous definition
88 | #define ARMA_64BIT_WORD
|
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hamDistBounded.cpp -o hamDistBounded.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from hamDistBounded.cpp:18:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c levAdjacencyMatSparse.cpp -o levAdjacencyMatSparse.o
In file included from levAdjacencyMatSparse.cpp:20:
dropDegreeZero.h:4: warning: "ARMA_64BIT_WORD" redefined
4 | #define ARMA_64BIT_WORD 1
|
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/legacy/armadillo:96,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:80,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from levAdjacencyMatSparse.cpp:18:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/legacy/armadillo_bits/compiler_setup.hpp:88: note: this is the location of the previous definition
88 | #define ARMA_64BIT_WORD
|
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c levDistBounded.cpp -o levDistBounded.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from levDistBounded.cpp:18:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c patternAdjacencyMatSparse.cpp -o patternAdjacencyMatSparse.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29,
from dropDegreeZero.h:5,
from patternAdjacencyMatSparse.cpp:23:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -DARMA_64BIT_WORD=1 -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c sortAdjacencyMatSparse.cpp -o sortAdjacencyMatSparse.o
In file included from sortAdjacencyMatSparse.cpp:24:
dropDegreeZero.h:4: warning: "ARMA_64BIT_WORD" redefined
4 | #define ARMA_64BIT_WORD 1
|
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/legacy/armadillo:96,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:80,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from sortAdjacencyMatSparse.cpp:18:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/legacy/armadillo_bits/compiler_setup.hpp:88: note: this is the location of the previous definition
88 | #define ARMA_64BIT_WORD
|
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:29:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/version/arma.h:71:153: note: '#pragma message: Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.'
71 | #pragma message("Using fallback compilation with Armadillo 14.6.3. Please consider defining -DARMA_USE_CURRENT. See GitHub issue #475 for more.")
| ^
g++ -std=gnu++17 -shared -s -static-libgcc -o NAIR.dll tmp.def RcppExports.o dropDegreeZero.o hamAdjacencyMatSparse.o hamDistBounded.o levAdjacencyMatSparse.o levDistBounded.o patternAdjacencyMatSparse.o sortAdjacencyMatSparse.o -fopenmp -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_09_05_01_50_00_10480/Rtmpglhwol/R.INSTALL2eb1c4e04362c/NAIR/src'
make[1]: Entering directory '/d/temp/2025_09_05_01_50_00_10480/Rtmpglhwol/R.INSTALL2eb1c4e04362c/NAIR/src'
make[1]: Leaving directory '/d/temp/2025_09_05_01_50_00_10480/Rtmpglhwol/R.INSTALL2eb1c4e04362c/NAIR/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-NAIR/00new/NAIR/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'NAIR' as NAIR_1.0.4.zip
* DONE (NAIR)