* installing *source* package 'Morpho' ... ** package 'Morpho' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 12.3.0' using C++ compiler: 'g++.exe (GCC) 12.3.0' make[1]: Entering directory '/d/temp/RtmpgpwQNz/R.INSTALL31b807d9c2d73/Morpho/src' g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CVAdists.cpp -o CVAdists.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CubeStuff.cpp -o CubeStuff.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ang_calc.cpp -o ang_calc.o In file included from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo:26, from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo.h:29, from doozers.h:7, from ang_calc.cpp:1: D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:326:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 326 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:331:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 331 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:334:61: note: '#pragma message: INFO: see the documentation for details' 334 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c armaGinvCpp.cpp -o armaGinvCpp.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c asymPerm.cpp -o asymPerm.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c barycenter.cpp -o barycenter.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c covPCA.cpp -o covPCA.o In file included from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo:26, from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo.h:29, from covPCA.h:5, from covPCA.cpp:1: D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:326:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 326 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:331:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 331 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:334:61: note: '#pragma message: INFO: see the documentation for details' 334 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c createL.cpp -o createL.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c doozers.cpp -o doozers.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c edgePlane.cpp -o edgePlane.o In file included from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo:26, from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo.h:29, from doozers.h:7, from edgePlane.cpp:1: D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:326:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 326 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:331:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 331 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:334:61: note: '#pragma message: INFO: see the documentation for details' 334 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c face_zero.cpp -o face_zero.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fastSubsetMeans.cpp -o fastSubsetMeans.o fastSubsetMeans.cpp: In function 'SEXPREC* fastSubsetMeans(SEXP, SEXP, SEXP, SEXP)': fastSubsetMeans.cpp:22:25: warning: comparison of integer expressions of different signedness: 'int' and 'arma::uword' {aka 'unsigned int'} [-Wsign-compare] 22 | for (int j = 0; j < tmpinds.size();j++) | ~~^~~~~~~~~~~~~~~~ gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c meshres.cpp -o meshres.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c permudistArma.cpp -o permudistArma.o permudistArma.cpp: In function 'SEXPREC* permudistArma(SEXP, SEXP, SEXP, SEXP)': permudistArma.cpp:9:10: warning: unused variable 'usemedian' [-Wunused-variable] 9 | bool usemedian = Rcpp::as(usemedian_); | ^~~~~~~~~ g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c points2mesh.cpp -o points2mesh.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tpsfx.cpp -o tpsfx.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tweakU.cpp -o tweakU.o g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c updateNormals.cpp -o updateNormals.o In file included from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo:26, from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo.h:29, from doozers.h:7, from updateNormals.h:4, from updateNormals.cpp:1: D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:326:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed' 326 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed") | ^ D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:331:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead' 331 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead") | ^ D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:334:61: note: '#pragma message: INFO: see the documentation for details' 334 | #pragma message ("INFO: see the documentation for details") | ^ g++ -std=gnu++17 -shared -s -static-libgcc -o Morpho.dll tmp.def CVAdists.o CubeStuff.o ang_calc.o armaGinvCpp.o asymPerm.o barycenter.o covPCA.o createL.o doozers.o edgePlane.o face_zero.o fastSubsetMeans.o init.o meshres.o permudistArma.o points2mesh.o tpsfx.o tweakU.o updateNormals.o -LD:/RCompile/recent/R-4.3.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.3.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -fopenmp -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.3.3/bin/x64 -lR make[1]: Leaving directory '/d/temp/RtmpgpwQNz/R.INSTALL31b807d9c2d73/Morpho/src' make[1]: Entering directory '/d/temp/RtmpgpwQNz/R.INSTALL31b807d9c2d73/Morpho/src' make[1]: Leaving directory '/d/temp/RtmpgpwQNz/R.INSTALL31b807d9c2d73/Morpho/src' installing to d:/Rcompile/CRANpkg/lib/4.3/00LOCK-Morpho/00new/Morpho/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'Morpho' as Morpho_2.12.zip * DONE (Morpho)