• using R version 4.4.3 (2025-02-28 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 13.3.0     GNU Fortran (GCC) 13.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'MiscMetabar/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'MiscMetabar' version '0.14.3'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'MiscMetabar' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [20s] OK
• checking whether the package can be loaded with stated dependencies ... [19s] OK
• checking whether the package can be unloaded cleanly ... [21s] OK
• checking whether the namespace can be loaded with stated dependencies ... [20s] OK
• checking whether the namespace can be unloaded cleanly ... [22s] OK
• checking loading without being on the library search path ... [22s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [59s] OK
• checking Rd files ... [15s] OK
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• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... [11s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [334s] OK
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [84s] ERROR   Running 'spelling.R' [0s]   Running 'testthat.R' [83s] Running the tests in 'tests/testthat.R' failed. Complete output:   > library(testthat)   > library(MiscMetabar)   Loading required package: phyloseq   Loading required package: ggplot2   Loading required package: dada2   Loading required package: Rcpp   Loading required package: dplyr      Attaching package: 'dplyr'      The following object is masked from 'package:testthat':          matches      The following objects are masked from 'package:stats':          filter, lag      The following objects are masked from 'package:base':          intersect, setdiff, setequal, union      Loading required package: purrr      Attaching package: 'purrr'      The following object is masked from 'package:testthat':          is_null      >   > test_check("MiscMetabar")   Starting 2 test processes   [ FAIL 1 | WARN 2 | SKIP 75 | PASS 81 ]      ══ Skipped tests (75) ══════════════════════════════════════════════════════════   • On CRAN (63): 'test_adonis.R:1:1', 'test_controls.R:7:3',     'test_controls.R:14:3', 'test_controls.R:46:3', 'test_deprecated.R:1:1',     'test_clean_pq.R:8:3', 'test_clean_pq.R:17:3',     'test_figures_alpha_div.R:17:3', 'test_figures_alpha_div.R:63:3',     'test_figures_alpha_div.R:73:3', 'test_figures_alpha_div.R:95:3',     'test_figures_alpha_div.R:122:3', 'test_figures_alpha_div.R:151:3',     'test_figures_alpha_div.R:157:3', 'test_deseq2_edgeR.R:16:5',     'test_deseq2_edgeR.R:25:3', 'test_deseq2_edgeR.R:48:5',     'test_deseq2_edgeR.R:59:3', 'test_figures_biplot.R:14:3',     'test_figures_biplot.R:52:3', 'test_figures_misc.R:26:3',     'test_figures_misc.R:35:3', 'test_figures_summary_plot.R:9:3',     'test_figures_summary_plot.R:19:3', 'test_figures_summary_plot.R:28:3',     'test_figures_beta_div.R:22:3', 'test_figures_beta_div.R:73:5',     'test_figures_beta_div.R:92:3', 'test_figures_beta_div.R:102:5',     'test_figures_beta_div.R:159:5', 'test_figures_beta_div.R:241:5',     'test_figures_beta_div.R:259:5', 'test_figures_beta_div.R:289:5',     'test_figures_beta_div.R:314:3', 'test_figures_beta_div.R:346:3',     'test_figures_beta_div.R:355:3', 'test_figures_beta_div.R:387:3',     'test_krona.R:7:3', 'test_figures_taxo.R:64:3', 'test_figures_taxo.R:165:3',     'test_figures_taxo.R:209:5', 'test_figures_taxo.R:252:5',     'test_figures_taxo.R:319:5', 'test_figures_taxo.R:354:3',     'test_figures_taxo.R:379:3', 'test_phyloseq_class.R:10:3',     'test_phyloseq_class.R:51:3', 'test_rw.R:8:3', 'test_rw.R:24:3',     'test_subset.R:7:3', 'test_subset.R:18:3', 'test_table_functions.R:34:5',     'test_table_functions.R:47:5', 'test_targets.R:5:3', 'test_targets.R:56:3',     'test_targets.R:101:3', 'test_targets.R:111:3', 'test_tuckey.R:5:3',     'test_tuckey.R:17:3', 'test_tuckey.R:26:3', 'test_misc.R:11:3',     'test_misc.R:30:3', 'test_misc.R:97:3'   • On Windows (12): 'test_figures_misc.R:10:3', 'test_figures_misc.R:18:3',     'test_figures_beta_div.R:208:3', 'test_figures_beta_div.R:401:3',     'test_figures_beta_div.R:413:3', 'test_figures_taxo.R:413:3',     'test_phyloseq_class.R:93:3', 'test_rw.R:38:3', 'test_table_functions.R:5:3',     'test_table_functions.R:18:3', 'test_targets.R:83:3', 'test_targets.R:128:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test_figures_beta_div.R:72:5'): graph_test_pq works ───────────────   `graph_test_pq(data_fungi_mini, fact = "Tree_name")` produced warnings.      [ FAIL 1 | WARN 2 | SKIP 75 | PASS 81 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [33s] OK
• checking PDF version of manual ... [27s] OK
• checking HTML version of manual ... [31s] OK
• DONE

Status: 1 ERROR