• using R version 4.4.3 (2025-02-28 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 13.3.0     GNU Fortran (GCC) 13.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'MetaComp/DESCRIPTION' ... OK
• this is package 'MetaComp' version '1.1.2'
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'MetaComp' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s] OK
• checking whether the package can be unloaded cleanly ... [1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s] OK
• checking whether the namespace can be unloaded cleanly ... [2s] OK
• checking loading without being on the library search path ... [2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s] OK
• checking Rd files ... [1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking LazyData ... NOTE   'LazyData' is specified without a 'data' directory
• checking examples ... [5s] OK
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [25s] ERROR   Running 'testthat.R' [24s] Running the tests in 'tests/testthat.R' failed. Complete output:   > library(testthat)   > library(MetaComp)   >   > test_check("MetaComp")   [1] "gottcha"   [1] "kraken"   Saving _problems/test_load_metaphlan_assignment-14.R   Saving _problems/test_pipeline-37.R   Saving _problems/test_plot_bwa_assignment-31.R   Saving _problems/test_plot_diamond_assignment-31.R   Saving _problems/test_plot_gottcha_assignment-31.R   Saving _problems/test_plot_kraken_assignment-31.R   Saving _problems/test_plot_merged_assignment_b-80.R   Saving _problems/test_plot_merged_assignment_d-80.R   Saving _problems/test_plot_merged_assignment_g-78.R   Saving _problems/test_plot_merged_assignment_g2-78.R   Saving _problems/test_plot_merged_assignment_k-80.R   Saving _problems/test_plot_merged_assignment_m-80.R   Saving _problems/test_plot_merged_assignment_p-81.R   Saving _problems/test_plot_metaphlan_assignment-31.R   Saving _problems/test_plot_pangia_assignment-31.R   [ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_load_metaphlan_assignment.R:14:1'): (code run outside of `test_that()`) ──   Error in `matches("LEVEL")`: could not find function "matches"   Backtrace:       ▆    1. └─testthat::expect_that(colnames(dat)[1], matches("LEVEL")) at test_load_metaphlan_assignment.R:14:1   ── Error ('test_pipeline.R:37:1'): (code run outside of `test_that()`) ─────────   Error in `is_true()`: could not find function "is_true"   Backtrace:       ▆    1. └─testthat::expect_that(...) at test_pipeline.R:37:1   ── Error ('test_plot_bwa_assignment.R:31:1'): (code run outside of `test_that()`) ──   Error in `is_true()`: could not find function "is_true"   Backtrace:       ▆    1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_bwa_assignment.R:31:1   ── Error ('test_plot_diamond_assignment.R:31:1'): (code run outside of `test_that()`) ──   Error in `is_true()`: could not find function "is_true"   Backtrace:       ▆    1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_diamond_assignment.R:31:1   ── Error ('test_plot_gottcha_assignment.R:31:1'): (code run outside of `test_that()`) ──   Error in `is_true()`: could not find function "is_true"   Backtrace:       ▆    1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_gottcha_assignment.R:31:1   ── Error ('test_plot_kraken_assignment.R:31:1'): (code run outside of `test_that()`) ──   Error in `is_true()`: could not find function "is_true"   Backtrace:       ▆    1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_kraken_assignment.R:31:1   ── Error ('test_plot_merged_assignment_b.R:80:1'): (code run outside of `test_that()`) ──   Error in `is_true()`: could not find function "is_true"   Backtrace:       ▆    1. └─testthat::expect_that(...) at test_plot_merged_assignment_b.R:80:1   ── Error ('test_plot_merged_assignment_d.R:80:1'): (code run outside of `test_that()`) ──   Error in `is_true()`: could not find function "is_true"   Backtrace:       ▆    1. └─testthat::expect_that(...) at test_plot_merged_assignment_d.R:80:1   ── Error ('test_plot_merged_assignment_g.R:78:1'): (code run outside of `test_that()`) ──   Error in `is_true()`: could not find function "is_true"   Backtrace:       ▆    1. └─testthat::expect_that(...) at test_plot_merged_assignment_g.R:78:1   ── Error ('test_plot_merged_assignment_g2.R:78:1'): (code run outside of `test_that()`) ──   Error in `is_true()`: could not find function "is_true"   Backtrace:       ▆    1. └─testthat::expect_that(...) at test_plot_merged_assignment_g2.R:78:1   ── Error ('test_plot_merged_assignment_k.R:80:1'): (code run outside of `test_that()`) ──   Error in `is_true()`: could not find function "is_true"   Backtrace:       ▆    1. └─testthat::expect_that(...) at test_plot_merged_assignment_k.R:80:1   ── Error ('test_plot_merged_assignment_m.R:80:1'): (code run outside of `test_that()`) ──   Error in `is_true()`: could not find function "is_true"   Backtrace:       ▆    1. └─testthat::expect_that(...) at test_plot_merged_assignment_m.R:80:1   ── Error ('test_plot_merged_assignment_p.R:81:1'): (code run outside of `test_that()`) ──   Error in `is_true()`: could not find function "is_true"   Backtrace:       ▆    1. └─testthat::expect_that(...) at test_plot_merged_assignment_p.R:81:1   ── Error ('test_plot_metaphlan_assignment.R:31:1'): (code run outside of `test_that()`) ──   Error in `is_true()`: could not find function "is_true"   Backtrace:       ▆    1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_metaphlan_assignment.R:31:1   ── Error ('test_plot_pangia_assignment.R:31:1'): (code run outside of `test_that()`) ──   Error in `is_true()`: could not find function "is_true"   Backtrace:       ▆    1. └─testthat::expect_that(file.exists(png_name), is_true()) at test_plot_pangia_assignment.R:31:1      [ FAIL 15 | WARN 21 | SKIP 0 | PASS 108 ]   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... [16s] OK
• checking HTML version of manual ... [1s] OK
• DONE

Status: 1 ERROR, 1 NOTE