* installing *source* package 'IsoSpecR' ... ** package 'IsoSpecR' successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 12.3.0' using C++ compiler: 'g++.exe (GCC) 12.3.0' using C++14 make[1]: Entering directory '/d/temp/RtmpiCkPse/R.INSTALL2915077fb7dda/IsoSpecR/src' gcc -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c IsoSpecR_init.c -o IsoSpecR_init.o g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Rinterface.cpp -o Rinterface.o g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c allocator.cpp -o allocator.o g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cwrapper.cpp -o cwrapper.o g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c dirtyAllocator.cpp -o dirtyAllocator.o g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c element_tables.cpp -o element_tables.o g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fasta.cpp -o fasta.o g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c fixedEnvelopes.cpp -o fixedEnvelopes.o g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c isoMath.cpp -o isoMath.o g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c isoSpec++.cpp -o isoSpec++.o g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c marginalTrek++.cpp -o marginalTrek++.o In file included from allocator.h:21, from marginalTrek++.h:25, from marginalTrek++.cpp:29: In member function 'void pod_vector::fast_reserve(size_t) [with T = int*]', inlined from 'void pod_vector::push_back(const T&) [with T = int*]' at pod_vector.h:97:25, inlined from 'bool IsoSpec::LayeredMarginal::extend(double, bool)' at marginalTrek++.cpp:550:33: pod_vector.h:76:46: warning: pointer may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 76 | first_free = new_store + (first_free - store); | ~~~~~~~~~~~~^~~~~~~~ pod_vector.h:73:52: note: call to 'void* realloc(void*, size_t)' here 73 | T* new_store = reinterpret_cast(realloc(store, n * sizeof(T))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In member function 'void pod_vector::fast_reserve(size_t) [with T = double]', inlined from 'void pod_vector::push_back(const T&) [with T = double]' at pod_vector.h:97:25, inlined from 'bool IsoSpec::LayeredMarginal::extend(double, bool)' at marginalTrek++.cpp:551:44: pod_vector.h:76:46: warning: pointer may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 76 | first_free = new_store + (first_free - store); | ~~~~~~~~~~~~^~~~~~~~ pod_vector.h:73:52: note: call to 'void* realloc(void*, size_t)' here 73 | T* new_store = reinterpret_cast(realloc(store, n * sizeof(T))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In member function 'void pod_vector::fast_reserve(size_t) [with T = int*]', inlined from 'void pod_vector::push_back(const T&) [with T = int*]' at pod_vector.h:97:25, inlined from 'bool IsoSpec::LayeredMarginal::extend(double, bool)' at marginalTrek++.cpp:584:53: pod_vector.h:76:46: warning: pointer may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 76 | first_free = new_store + (first_free - store); | ~~~~~~~~~~~~^~~~~~~~ pod_vector.h:73:52: note: call to 'void* realloc(void*, size_t)' here 73 | T* new_store = reinterpret_cast(realloc(store, n * sizeof(T))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ In member function 'void pod_vector::fast_reserve(size_t) [with T = double]', inlined from 'void pod_vector::push_back(const T&) [with T = double]' at pod_vector.h:97:25, inlined from 'bool IsoSpec::LayeredMarginal::extend(double, bool)' at marginalTrek++.cpp:585:64: pod_vector.h:76:46: warning: pointer may be used after 'void* realloc(void*, size_t)' [-Wuse-after-free] 76 | first_free = new_store + (first_free - store); | ~~~~~~~~~~~~^~~~~~~~ pod_vector.h:73:52: note: call to 'void* realloc(void*, size_t)' here 73 | T* new_store = reinterpret_cast(realloc(store, n * sizeof(T))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c misc.cpp -o misc.o g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mman.cpp -o mman.o g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c operators.cpp -o operators.o g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c unity-build.cpp -o unity-build.o g++ -shared -s -static-libgcc -o IsoSpecR.dll tmp.def IsoSpecR_init.o RcppExports.o Rinterface.o allocator.o cwrapper.o dirtyAllocator.o element_tables.o fasta.o fixedEnvelopes.o isoMath.o isoSpec++.o marginalTrek++.o misc.o mman.o operators.o unity-build.o -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.3.3/bin/x64 -lR make[1]: Leaving directory '/d/temp/RtmpiCkPse/R.INSTALL2915077fb7dda/IsoSpecR/src' make[1]: Entering directory '/d/temp/RtmpiCkPse/R.INSTALL2915077fb7dda/IsoSpecR/src' make[1]: Leaving directory '/d/temp/RtmpiCkPse/R.INSTALL2915077fb7dda/IsoSpecR/src' installing to d:/Rcompile/CRANpkg/lib/4.3/00LOCK-IsoSpecR/00new/IsoSpecR/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * MD5 sums packaged installation of 'IsoSpecR' as IsoSpecR_2.1.3.zip * DONE (IsoSpecR)