* installing *source* package 'GenomeAdmixR' ...
** package 'GenomeAdmixR' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 12.3.0'
using C++14
make[1]: Entering directory '/d/temp/RtmpABCD13/R.INSTALL2409c7f5e4a68/GenomeAdmixR/src'
g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppParallel/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Fish.cpp -o Fish.o
g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppParallel/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppParallel/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c helper_functions.cpp -o helper_functions.o
helper_functions.cpp: In function 'arma::mat update_frequency_tibble(const std::vector<Fish>&, double, const std::vector<int>&, int, double)':
helper_functions.cpp:128:20: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<Fish>::size_type' {aka 'long long unsigned int'} [-Wsign-compare]
128 | for (int i = 0; i < v.size(); ++i) {
| ~~^~~~~~~~~~
g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppParallel/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c simulate.cpp -o simulate.o
g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppParallel/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c simulate_emp.cpp -o simulate_emp.o
g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppParallel/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c simulate_migration.cpp -o simulate_migration.o
g++ -std=gnu++14 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppParallel/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -DRCPP_PARALLEL_USE_TBB=1 -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c simulate_migration_emp.cpp -o simulate_migration_emp.o
simulate_migration_emp.cpp: In function 'Rcpp::List simulate_migration_emp_cpp(const Rcpp::NumericMatrix&, const Rcpp::NumericMatrix&, const Rcpp::NumericVector&, Rcpp::NumericMatrix, const Rcpp::NumericVector&, int, double, bool, bool, const Rcpp::NumericVector&, bool, double, double, const Rcpp::NumericMatrix&, int, const Rcpp::NumericVector&)':
simulate_migration_emp.cpp:425:25: warning: comparison of integer expressions of different signedness: 'int' and '__gnu_cxx::__alloc_traits<std::allocator<long long unsigned int>, long long unsigned int>::value_type' {aka 'long long unsigned int'} [-Wsign-compare]
425 | for (int j = 0; j < pop_size[1]; ++j) {
g++ -shared -s -static-libgcc -o GenomeAdmixR.dll tmp.def Fish.o RcppExports.o helper_functions.o simulate.o simulate_emp.o simulate_migration.o simulate_migration_emp.o -LD:/RCompile/CRANpkg/lib/4.3/RcppParallel/lib/x64 -ltbb -ltbbmalloc -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.3.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/RtmpABCD13/R.INSTALL2409c7f5e4a68/GenomeAdmixR/src'
make[1]: Entering directory '/d/temp/RtmpABCD13/R.INSTALL2409c7f5e4a68/GenomeAdmixR/src'
make[1]: Leaving directory '/d/temp/RtmpABCD13/R.INSTALL2409c7f5e4a68/GenomeAdmixR/src'
installing to d:/Rcompile/CRANpkg/lib/4.3/00LOCK-GenomeAdmixR/00new/GenomeAdmixR/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'GenomeAdmixR' as GenomeAdmixR_2.1.7.zip
* DONE (GenomeAdmixR)