* installing *source* package 'GPTCM' ...
** package 'GPTCM' successfully unpacked and MD5 sums checked
** using staged installation
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
using C compiler: 'gcc.exe (GCC) 13.3.0'
using C++ compiler: 'g++.exe (GCC) 13.3.0'
using C++17
make[1]: Entering directory '/d/temp/2025_09_17_01_50_00_21129/Rtmpme695e/R.INSTALL2e143aad1224/GPTCM/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -I../inst/include -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BVS.cpp -o BVS.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from global.h:6,
from BVS.h:6,
from BVS.cpp:5:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -I../inst/include -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from RcppExports.cpp:4:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -I../inst/include -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c arms.cpp -o arms.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -I../inst/include -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c arms_gibbs.cpp -o arms_gibbs.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from eval_func.h:7,
from arms_gibbs.h:9,
from arms_gibbs.cpp:3:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
arms_gibbs.cpp: In static member function 'static void ARMS_Gibbs::arms_gibbs_xi(armsParmClass, arma::vec&, double, double, arma::mat, arma::mat, const DataClass&)':
arms_gibbs.cpp:47:36: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
47 | for (unsigned int i = 0; i < armsPar.ninit; ++i)
| ~~^~~~~~~~~~~~~~~
arms_gibbs.cpp: In static member function 'static void ARMS_Gibbs::arms_gibbs_beta(armsParmClass, arma::mat&, arma::vec&, double&, double, double, double, double, arma::umat, double, arma::vec&, arma::mat, arma::mat&, arma::mat, const DataClass&, double&)':
arms_gibbs.cpp:221:36: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
221 | for (unsigned int i = 0; i < armsPar.ninit; ++i)
| ~~^~~~~~~~~~~~~~~
arms_gibbs.cpp: In static member function 'static void ARMS_Gibbs::arms_gibbs_betaK(unsigned int, armsParmClass, arma::mat&, double, double, double, double, arma::umat, double, arma::vec&, arma::mat, arma::mat&, arma::mat, const DataClass&, double&)':
arms_gibbs.cpp:393:36: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
393 | for (unsigned int i = 0; i < armsPar.ninit; ++i)
| ~~^~~~~~~~~~~~~~~
arms_gibbs.cpp: In static member function 'static void ARMS_Gibbs::arms_gibbs_zeta(armsParmClass, arma::mat&, double&, arma::vec&, double, double, double, double, arma::umat, double, bool, arma::vec&, arma::mat, arma::mat, const DataClass&, double&)':
arms_gibbs.cpp:535:36: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
535 | for (unsigned int i = 0; i < armsPar.ninit; ++i)
| ~~^~~~~~~~~~~~~~~
arms_gibbs.cpp: In static member function 'static void ARMS_Gibbs::arms_gibbs_zetaK(unsigned int, armsParmClass, arma::mat&, double, double, double, double, arma::umat, double, bool, arma::vec&, arma::mat, arma::mat, const DataClass&, double&)':
arms_gibbs.cpp:691:36: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
691 | for (unsigned int i = 0; i < armsPar.ninit; ++i)
| ~~^~~~~~~~~~~~~~~
arms_gibbs.cpp: In static member function 'static void ARMS_Gibbs::arms_kappa(armsParmClass, double&, double, double, bool, arma::vec, arma::mat, arma::mat, const DataClass&)':
arms_gibbs.cpp:807:36: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'const int' [-Wsign-compare]
807 | for (unsigned int i = 0; i < armsPar.ninit; ++i)
| ~~^~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -I../inst/include -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c drive.cpp -o drive.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from simple_gibbs.h:7,
from drive.cpp:4:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -I../inst/include -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c eval_func.cpp -o eval_func.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from eval_func.h:7,
from eval_func.cpp:5:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
gcc -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -I../inst/include -DARMA_USE_CURRENT -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c simple_gibbs.cpp -o simple_gibbs.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
from simple_gibbs.h:7,
from simple_gibbs.cpp:3:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
373 | #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
| ^
g++ -shared -s -static-libgcc -o GPTCM.dll tmp.def BVS.o RcppExports.o arms.o arms_gibbs.o drive.o eval_func.o init.o simple_gibbs.o -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_09_17_01_50_00_21129/Rtmpme695e/R.INSTALL2e143aad1224/GPTCM/src'
make[1]: Entering directory '/d/temp/2025_09_17_01_50_00_21129/Rtmpme695e/R.INSTALL2e143aad1224/GPTCM/src'
make[1]: Leaving directory '/d/temp/2025_09_17_01_50_00_21129/Rtmpme695e/R.INSTALL2e143aad1224/GPTCM/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-GPTCM/00new/GPTCM/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'GPTCM' as GPTCM_1.1.1.zip
* DONE (GPTCM)