- using R version 4.4.3 (2025-02-28 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'GPCERF/DESCRIPTION' ... OK
- this is package 'GPCERF' version '0.2.4'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'GPCERF' can be installed ... OK
See the install log for details.
- used C++ compiler: 'g++.exe (GCC) 13.3.0'
- checking C++ specification ... OK
Not all R platforms support C++17
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [4s] OK
- checking whether the package can be loaded with stated dependencies ... [4s] OK
- checking whether the package can be unloaded cleanly ... [4s] OK
- checking whether the namespace can be loaded with stated dependencies ... [3s] OK
- checking whether the namespace can be unloaded cleanly ... [4s] OK
- checking loading without being on the library search path ... [4s] OK
- checking whether startup messages can be suppressed ... [4s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [13s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compiled code ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [6s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [206s] ERROR
Running 'testthat.R' [206s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2026-01-05 16:57:23.62878 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2026-01-05 16:57:32.82465 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2026-01-05 16:57:41.360011 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2026-01-05 16:57:52.975546 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:01.455334 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:09.93103 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=26956 on localhost:11044 at 16:58:10.276
2026-01-05 16:58:13.740134 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.81 s.
2026-01-05 16:58:13.806471 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:21.393564 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:29.374142 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2026-01-05 16:58:37.271728 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:44.88705 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:58:49.915431 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:58:56.499752 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:58:56.512752 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:59:04.740577 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.756815 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.773356 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.791154 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.808977 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.826021 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.843517 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:04.857898 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:59:13.496917 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
starting worker pid=80984 on localhost:11044 at 16:59:13.810
starting worker pid=84680 on localhost:11044 at 16:59:13.889
2026-01-05 16:59:23.145014 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:59:31.432715 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:31.43565 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:31.440607 CRANWIN2 50564 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=11840 on localhost:11044 at 16:59:31.767
2026-01-05 16:59:35.084238 CRANWIN2 50564 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 3.64000000000001 s.} ...
2026-01-05 16:59:35.08664 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=21596 on localhost:11044 at 16:59:35.437
2026-01-05 16:59:38.869814 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.78 s.
2026-01-05 16:59:38.872782 CRANWIN2 50564 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=61816 on localhost:11044 at 16:59:39.139
2026-01-05 16:59:43.150226 CRANWIN2 50564 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.28 s.
2026-01-05 16:59:43.15355 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 11.71 s.
2026-01-05 16:59:43.16102 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:43.165756 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:43.184282 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:43.18671 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:43.224996 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:43.229204 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:43.245437 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 16:59:50.067591 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:50.07189 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:50.091592 CRANWIN2 50564 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2026-01-05 16:59:50.096234 CRANWIN2 50564 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2026-01-05 16:59:50.145882 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2026-01-05 16:59:57.978731 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:00:05.671469 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=40176 on localhost:11044 at 17:00:05.955
2026-01-05 17:00:09.651378 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.96000000000001 s.
2026-01-05 17:00:09.654629 CRANWIN2 50564 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=111168 on localhost:11044 at 17:00:10.016
2026-01-05 17:00:14.191393 CRANWIN2 50564 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.54999999999998 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2026-01-05 17:00:14.24468 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:00:20.969078 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:00:28.496578 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=104596 on localhost:11044 at 17:00:28.779
2026-01-05 17:00:32.33652 CRANWIN2 50564 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.84 s.
2026-01-05 17:00:32.373872 CRANWIN2 50564 GPCERF estimate_gps INFO: Started estimating GPS values ...
2026-01-05 17:00:40.090548 CRANWIN2 50564 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=66204 on localhost:11044 at 17:00:40.410
2026-01-05 17:00:44.82498 CRANWIN2 50564 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.72 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [171s] OK
- checking PDF version of manual ... [17s] OK
- checking HTML version of manual ... [6s] OK
- DONE
Status: 1 ERROR