- using R version 4.4.3 (2025-02-28 ucrt)
- using platform: x86_64-w64-mingw32
- R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
- running under: Windows Server 2022 x64 (build 20348)
- using session charset: UTF-8
- checking for file 'GPCERF/DESCRIPTION' ... OK
- this is package 'GPCERF' version '0.2.4'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'GPCERF' can be installed ... OK
See the install log for details.
- used C++ compiler: 'g++.exe (GCC) 13.3.0'
- checking C++ specification ... OK
Not all R platforms support C++17
- checking installed package size ... OK
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [4s] OK
- checking whether the package can be loaded with stated dependencies ... [4s] OK
- checking whether the package can be unloaded cleanly ... [4s] OK
- checking whether the namespace can be loaded with stated dependencies ... [4s] OK
- checking whether the namespace can be unloaded cleanly ... [4s] OK
- checking loading without being on the library search path ... [4s] OK
- checking whether startup messages can be suppressed ... [4s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [13s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compiled code ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ... [6s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ... [215s] ERROR
Running 'testthat.R' [215s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> library(testthat)
> library(GPCERF)
>
> test_check("GPCERF")
2025-12-22 08:23:06.566256 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ...
Loading required package: nnls
Saving _problems/test-compute_deriv_nn-21.R
2025-12-22 08:23:15.492899 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_deriv_weights_gp-17.R
2025-12-22 08:23:24.554266 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_m_sigma-32.R
2025-12-22 08:23:37.301504 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-22 08:23:45.428706 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-22 08:23:54.316382 CRANWIN2 69140 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=22608 on localhost:11192 at 08:23:54.684
2025-12-22 08:23:58.11715 CRANWIN2 69140 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.8 s.
2025-12-22 08:23:58.176058 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-22 08:24:06.31885 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-22 08:24:14.580268 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-compute_weight_gp-49.R
2025-12-22 08:24:23.171613 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-22 08:24:31.542141 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-22 08:24:36.710869 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-22 08:24:43.632171 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-22 08:24:43.653814 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-22 08:24:52.340591 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-22 08:24:52.356692 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-22 08:24:52.373263 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-22 08:24:52.389605 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-22 08:24:52.406278 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-22 08:24:52.42446 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-22 08:24:52.443867 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-22 08:24:52.463597 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-22 08:25:01.123821 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
starting worker pid=28184 on localhost:11192 at 08:25:01.391
starting worker pid=61484 on localhost:11192 at 08:25:01.450
2025-12-22 08:25:10.528568 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-22 08:25:18.755773 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-22 08:25:18.759444 CRANWIN2 69140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-22 08:25:18.829491 CRANWIN2 69140 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=72436 on localhost:11192 at 08:25:19.163
2025-12-22 08:25:23.016778 CRANWIN2 69140 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.18000000000001 s.} ...
2025-12-22 08:25:23.019182 CRANWIN2 69140 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=43040 on localhost:11192 at 08:25:23.364
2025-12-22 08:25:26.693001 CRANWIN2 69140 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.67999999999998 s.
2025-12-22 08:25:26.696422 CRANWIN2 69140 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=95980 on localhost:11192 at 08:25:27.063
2025-12-22 08:25:32.009623 CRANWIN2 69140 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 5.31 s.
2025-12-22 08:25:32.013346 CRANWIN2 69140 GPCERF estimate_cerf_nngp INFO: Done with estimating cerf using nngp approach Wall clock time: 13.26 s.
2025-12-22 08:25:32.020252 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-22 08:25:32.024354 CRANWIN2 69140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-22 08:25:32.045002 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-22 08:25:32.049625 CRANWIN2 69140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-22 08:25:32.101883 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-22 08:25:32.10544 CRANWIN2 69140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-22 08:25:32.123366 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-22 08:25:39.41773 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-22 08:25:39.421272 CRANWIN2 69140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-22 08:25:39.437877 CRANWIN2 69140 GPCERF log_system_info INFO: System name: Windows, OS type: windows, machine architecture: x86-64, user: CRAN, R version 4.4.3 (2025-02-28 ucrt), detected cores: 56
2025-12-22 08:25:39.441279 CRANWIN2 69140 GPCERF estimate_cerf_nngp INFO: Working on estimating cerf using nngp approach ...
2025-12-22 08:25:39.490986 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ...
Saving _problems/test-estimate_gps-15.R
2025-12-22 08:25:47.649425 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-22 08:25:56.010984 CRANWIN2 69140 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=26248 on localhost:11192 at 08:25:56.372
2025-12-22 08:26:00.408037 CRANWIN2 69140 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 4.40000000000001 s.
2025-12-22 08:26:00.411704 CRANWIN2 69140 GPCERF estimate_mean_sd_nn INFO: Working on estimating mean and sd using nngp approach ...
starting worker pid=45600 on localhost:11192 at 08:26:00.795
2025-12-22 08:26:04.888087 CRANWIN2 69140 GPCERF estimate_mean_sd_nn INFO: Done with estimating mean and sd using nngp approach Wall clock time: 4.47999999999999 s.
Saving _problems/test-estimate_mean_sd_nn-37.R
2025-12-22 08:26:04.991636 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-22 08:26:11.890476 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-22 08:26:19.529144 CRANWIN2 69140 GPCERF estimate_noise_nn INFO: Working on estimating residual error with nngp ...
starting worker pid=106376 on localhost:11192 at 08:26:19.857
2025-12-22 08:26:23.395842 CRANWIN2 69140 GPCERF estimate_noise_nn INFO: Done with estimating residual error with nngpWall clock time: 3.86000000000001 s.
2025-12-22 08:26:23.436473 CRANWIN2 69140 GPCERF estimate_gps INFO: Started estimating GPS values ...
2025-12-22 08:26:31.387043 CRANWIN2 69140 GPCERF find_optimal_nn INFO: Started finding optimal values ...
starting worker pid=18964 on localhost:11192 at 08:26:31.748
2025-12-22 08:26:36.331655 CRANWIN2 69140 GPCERF find_optimal_nn INFO: Done with finding optimal value.(Wall clock time: 4.94 s.} ...
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-compute_deriv_nn.R:21:3'): compute_deriv_nn works as expected! ──
Expected `deriv_val[1, 1]` to equal 1.558466.
Differences:
`actual`: -1.0
`expected`: 1.6
── Failure ('test-compute_deriv_weights_gp.R:17:3'): compute_deriv_weights_gp works as expected! ──
Expected `weights[37]` to equal 3.307249e-05.
Differences:
`actual`: -0.00011
`expected`: 0.00003
── Failure ('test-compute_m_sigma.R:32:4'): compute_m_sigma works as expected! ──
Expected `gp_cerf[10]` to equal 2.105425.
Differences:
`actual`: -6.1
`expected`: 2.1
── Failure ('test-compute_weight_gp.R:49:3'): multiplication works ─────────────
Expected `weight$weight[28]` to equal 0.0002182767.
Differences:
`actual`: 0.00000
`expected`: 0.00022
── Failure ('test-estimate_gps.R:15:3'): estimate_gps works as expected. ───────
Expected `gps_m$gps[4, 1]` to equal 8.74310154.
Differences:
`actual`: 7.3
`expected`: 8.7
── Failure ('test-estimate_mean_sd_nn.R:37:3'): estimate_mean_sd_nn works as expected! ──
Expected `val[10]` to equal 5.031225.
Differences:
`actual`: 5.067
`expected`: 5.031
[ FAIL 6 | WARN 2 | SKIP 0 | PASS 101 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [180s] OK
- checking PDF version of manual ... [19s] OK
- checking HTML version of manual ... [6s] OK
- DONE
Status: 1 ERROR