* installing *source* package 'DOVE' ...
** package 'DOVE' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 12.3.0'
make[1]: Entering directory '/d/temp/RtmpmWbe3M/R.INSTALL1e6c079c327fb/DOVE/src'
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c BS.cpp -o BS.o
In file included from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo.h:29,
from BS.cpp:2:
D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed'
321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
| ^
D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead'
326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
| ^
D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details'
329 | #pragma message ("INFO: see the documentation for details")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Cox.cpp -o Cox.o
In file included from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo.h:29,
from Cox.cpp:2:
D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed'
321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
| ^
D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead'
326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
| ^
D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details'
329 | #pragma message ("INFO: see the documentation for details")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Cox_noX.cpp -o Cox_noX.o
In file included from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo.h:29,
from Cox_noX.cpp:2:
D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed'
321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
| ^
D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead'
326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
| ^
D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details'
329 | #pragma message ("INFO: see the documentation for details")
| ^
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c compare.cpp -o compare.o
g++ -std=gnu++17 -I"D:/RCompile/recent/R-4.3.3/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.3/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include' -I"d:/rtools43/x86_64-w64-mingw32.static.posix/include" -fopenmp -pedantic -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c iteration.cpp -o iteration.o
In file included from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo:26,
from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/RcppArmadillo.h:29,
from iteration.cpp:2:
D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:321:86: note: '#pragma message: INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed'
321 | #pragma message ("INFO: support for ARMA_DONT_PRINT_ERRORS option has been removed")
| ^
D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:326:75: note: '#pragma message: INFO: suggest to use ARMA_WARN_LEVEL option instead'
326 | #pragma message ("INFO: suggest to use ARMA_WARN_LEVEL option instead")
| ^
D:/RCompile/CRANpkg/lib/4.3/RcppArmadillo/include/armadillo_bits/config.hpp:329:61: note: '#pragma message: INFO: see the documentation for details'
329 | #pragma message ("INFO: see the documentation for details")
| ^
iteration.cpp: In function 'scoreData em2Comp(arma::mat&, arma::mat&, arma::imat&, int, int)':
iteration.cpp:215:7: warning: unused variable 'j' [-Wunused-variable]
215 | int j;
| ^
g++ -std=gnu++17 -shared -s -static-libgcc -o DOVE.dll tmp.def BS.o Cox.o Cox_noX.o RcppExports.o compare.o iteration.o -fopenmp -LD:/RCompile/recent/R-4.3.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.3.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools43/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.3.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/RtmpmWbe3M/R.INSTALL1e6c079c327fb/DOVE/src'
make[1]: Entering directory '/d/temp/RtmpmWbe3M/R.INSTALL1e6c079c327fb/DOVE/src'
make[1]: Leaving directory '/d/temp/RtmpmWbe3M/R.INSTALL1e6c079c327fb/DOVE/src'
installing to d:/Rcompile/CRANpkg/lib/4.3/00LOCK-DOVE/00new/DOVE/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'DOVE' as DOVE_1.10.zip
* DONE (DOVE)