* installing *source* package 'CoxPlus' ...
** package 'CoxPlus' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
make[1]: Entering directory '/d/temp/2025_10_21_12_46_10_10564/RtmpIt7CMP/R.INSTALL7e48481ec2a/CoxPlus/src'
g++ -std=gnu++17  -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"     -pedantic -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c coxReg.cpp -o coxReg.o
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:26,
                 from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/RcppArmadillo.h:32,
                 from coxReg.cpp:29:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/config.hpp:373:72: note: '#pragma message: NOTE: option ARMA_CRIPPLED_LAPACK is not supported'
  373 |   #pragma message ("NOTE: option ARMA_CRIPPLED_LAPACK is not supported")
      |                                                                        ^
coxReg.cpp: In member function 'void CoxReg::estimateNormal()':
coxReg.cpp:554:78: warning: 'eT arma::Mat<eT>::max(arma::uword&) const [with eT = double; arma::uword = unsigned int]' is deprecated: use .index_max() instead [-Wdeprecated-declarations]
  554 |                                                                 xbeta_est.max(index);
      |                                                                 ~~~~~~~~~~~~~^~~~~~~
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:201:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:545:56: note: declared here
  545 |   [[deprecated("use .index_max() instead")]] inline eT max(uword& index_of_max_val) const;
      |                                                        ^~~
coxReg.cpp:557:78: warning: 'eT arma::Mat<eT>::min(arma::uword&) const [with eT = double; arma::uword = unsigned int]' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
  557 |                                                                 xbeta_est.min(index);
      |                                                                 ~~~~~~~~~~~~~^~~~~~~
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/Mat_bones.hpp:544:56: note: declared here
  544 |   [[deprecated("use .index_min() instead")]] inline eT min(uword& index_of_min_val) const;
      |                                                        ^~~
coxReg.cpp: In member function 'void CoxReg::getRobustV()':
coxReg.cpp:853:70: warning: 'eT arma::Mat<eT>::max(arma::uword&) const [with eT = double; arma::uword = unsigned int]' is deprecated: use .index_max() instead [-Wdeprecated-declarations]
  853 |                                                         xbeta_est.max(index);
      |                                                         ~~~~~~~~~~~~~^~~~~~~
In file included from D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo:692:
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7850:1: note: declared here
 7850 | Mat<eT>::max(uword& index_of_max_val) const
      | ^~~~~~~
coxReg.cpp:856:70: warning: 'eT arma::Mat<eT>::min(arma::uword&) const [with eT = double; arma::uword = unsigned int]' is deprecated: use .index_min() instead [-Wdeprecated-declarations]
  856 |                                                         xbeta_est.min(index);
      |                                                         ~~~~~~~~~~~~~^~~~~~~
D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include/current/armadillo_bits/Mat_meat.hpp:7829:1: note: declared here
 7829 | Mat<eT>::min(uword& index_of_min_val) const
      | ^~~~~~~
g++ -std=gnu++17 -shared -s -static-libgcc -o CoxPlus.dll tmp.def coxReg.o -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_10_21_12_46_10_10564/RtmpIt7CMP/R.INSTALL7e48481ec2a/CoxPlus/src'
make[1]: Entering directory '/d/temp/2025_10_21_12_46_10_10564/RtmpIt7CMP/R.INSTALL7e48481ec2a/CoxPlus/src'
make[1]: Leaving directory '/d/temp/2025_10_21_12_46_10_10564/RtmpIt7CMP/R.INSTALL7e48481ec2a/CoxPlus/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-CoxPlus/00new/CoxPlus/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'CoxPlus' as CoxPlus_1.1.1.zip
* DONE (CoxPlus)