• using R version 4.4.3 (2025-02-28 ucrt)
• using platform: x86_64-w64-mingw32
• R was compiled by     gcc.exe (GCC) 13.3.0     GNU Fortran (GCC) 13.3.0
• running under: Windows Server 2022 x64 (build 20348)
• using session charset: UTF-8
• checking for file 'CimpleG/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'CimpleG' version '1.0.0'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'CimpleG' can be installed ... OK See the install log for details.
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
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• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s] OK
• checking whether the package can be unloaded cleanly ... [1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s] OK
• checking loading without being on the library search path ... [2s] OK
• checking whether startup messages can be suppressed ... [1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s] OK
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• checking for missing documentation entries ... OK
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• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ... [21s] OK
• checking for unstated dependencies in 'tests' ... OK
• checking tests ... [159s] ERROR   Running 'spelling.R' [0s]   Running 'testthat.R' [158s] Running the tests in 'tests/testthat.R' failed. Complete output:   > library(testthat)   > library(CimpleG)   ---------------------   CimpleG version 1.0.0   ---------------------   >   > test_check("CimpleG")   Starting 2 test processes.   > test-CimpleG.R: Setting options('download.file.method.GEOquery'='auto')   > test-CimpleG.R: Setting options('GEOquery.inmemory.gpl'=FALSE)   Saving _problems/test3-CimpleG-xgboost-13.R   [ FAIL 1 | WARN 0 | SKIP 4 | PASS 62 ]      ══ Skipped tests (4) ═══════════════════════════════════════════════════════════   • On CRAN (3): 'test1-CimpleG-decisiontree.R:3:3', 'test1-CimpleG-nnet.R:3:3',     'test1-CimpleG-rf.R:3:3'   • parallel not working properly locally (1): 'test8-CimpleG-parallel.R:4:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test3-CimpleG-xgboost.R:5:3'): signatures are generated w/ xgboost ──   <purrr_error_indexed/rlang_error/error/condition>   Error in `purrr::map(.x = target_columns, .f = work_helper)`: i In index: 1.   Caused by error in `x$callbacks <- purrr::map(x$callbacks, function(x) as.function(c(formals(x),     body(x)), env = rlang::base_env()))`:   ! ALTLIST classes must provide a Set_elt method [class: XGBAltrepPointerClass, pkg: xgboost]   Backtrace:        ▆     1. ├─base::suppressWarnings(...) at test3-CimpleG-xgboost.R:5:3     2. │ └─base::withCallingHandlers(...)     3. ├─base::suppressMessages(...)     4. │ └─base::withCallingHandlers(...)     5. ├─CimpleG::CimpleG(...)     6. ├─CimpleG:::CimpleG.matrix(...)     7. │ └─CimpleG:::CimpleG_main(...)     8. │ ├─purrr::map(.x = target_columns, .f = work_helper) %>% ...     9. │ └─purrr::map(.x = target_columns, .f = work_helper)    10. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress)    11. │ ├─purrr:::with_indexed_errors(...)    12. │ │ └─base::withCallingHandlers(...)    13. │ ├─purrr:::call_with_cleanup(...)    14. │ └─CimpleG (local) .f(.x[[i]], ...)    15. │ └─CimpleG:::train_general_model(...)    16. │ └─cimpleg_final_model %>% butcher::axe_call() %>% butcher::axe_env()    17. ├─butcher::axe_env(.)    18. ├─workflows:::axe_env.workflow(.)    19. │ ├─butcher::axe_env(fit, verbose = verbose, ...)    20. │ └─butcher:::axe_env.model_fit(fit, verbose = verbose, ...)    21. │ ├─butcher::axe_env(x$fit, verbose = verbose, ...)    22. │ └─butcher:::axe_env.xgb.Booster(x$fit, verbose = verbose, ...)    23. └─base::.handleSimpleError(...)    24. └─purrr (local) h(simpleError(msg, call))    25. └─cli::cli_abort(...)    26. └─rlang::abort(...)      [ FAIL 1 | WARN 0 | SKIP 4 | PASS 62 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [17s] OK
• checking PDF version of manual ... [18s] OK
• checking HTML version of manual ... [5s] OK
• DONE

Status: 1 ERROR