* installing *source* package 'BayesReversePLLH' ...
** package 'BayesReversePLLH' successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: 'g++.exe (GCC) 13.3.0'
using C++11
make[1]: Entering directory '/d/temp/2025_07_18_01_50_00_13420/RtmpiU5D3w/R.INSTALLecd833f59b3/BayesReversePLLH/src'
g++  -std=gnu++11 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c BayesReversePLLH.cpp -o BayesReversePLLH.o
BayesReversePLLH.cpp: In function 'arma::vec GetSlopePLLH(arma::vec, arma::vec, int)':
BayesReversePLLH.cpp:94:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
   94 |   for(m=0;m<slopes.n_rows;m++){
      |           ~^~~~~~~~~~~~~~
BayesReversePLLH.cpp: In function 'double LikePLLHTrt(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, int, double)':
BayesReversePLLH.cpp:135:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  135 |     for(m=0; m<Y.n_rows;m++){
      |              ~^~~~~~~~~
BayesReversePLLH.cpp: In function 'double LikePLLHCOV(arma::vec, arma::vec, arma::mat, arma::vec, arma::vec, int, arma::vec)':
BayesReversePLLH.cpp:196:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  196 |     for(m=0; m<Y.n_rows;m++){
      |              ~^~~~~~~~~
BayesReversePLLH.cpp: In function 'double ApproxMean(arma::vec, arma::vec, arma::vec, int)':
BayesReversePLLH.cpp:291:13: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  291 |   for(m=0; m<Y.n_rows;m++){
      |            ~^~~~~~~~~
BayesReversePLLH.cpp: In function 'arma::vec SurvPLLH(arma::vec, arma::vec, arma::vec, int)':
BayesReversePLLH.cpp:351:13: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  351 |   for(m=0; m<Y.n_rows;m++){
      |            ~^~~~~~~~~
BayesReversePLLH.cpp:345:10: warning: unused variable 'mean' [-Wunused-variable]
  345 |   double mean=0;
      |          ^~~~
BayesReversePLLH.cpp: In function 'int SampleBirth(arma::vec, int)':
BayesReversePLLH.cpp:424:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  424 |   for(m=1;m<cumprob.n_rows;m++){
      |           ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:438:14: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
  438 |     for(m=1;m<cumprob.n_rows;m++){
      |             ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp: In function 'Rcpp::List BayesPiecewiseLinearLogHazardTrt(arma::vec, arma::vec, arma::vec, double, int)':
BayesReversePLLH.cpp:905:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  905 |         for(j=Spot;j<(lam.n_rows-1);j++){
      |                    ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:912:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  912 |       for(j=Spot; j<(s.n_rows-1);j++){
      |                   ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:977:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  977 |       for(j=(Spot+1);j<(s.n_rows-1);j++){
      |                      ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:982:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
  982 |       for(j=(Spot+1);j<(lam.n_rows-1);j++){
      |                      ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:1045:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1045 |       for(j=0;j<sstore.n_cols;j++){
      |               ~^~~~~~~~~~~~~~
BayesReversePLLH.cpp:1048:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1048 |       for(j=0;j<lamstore.n_cols;j++){
      |               ~^~~~~~~~~~~~~~~~
BayesReversePLLH.cpp:513:10: warning: unused variable 'PSpike' [-Wunused-variable]
  513 |   double PSpike=PSlab/(1-PSlab);
      |          ^~~~~~
BayesReversePLLH.cpp:519:7: warning: unused variable 'b' [-Wunused-variable]
  519 |   int b=0;
      |       ^
BayesReversePLLH.cpp:520:7: warning: unused variable 'k' [-Wunused-variable]
  520 |   int k=0;
      |       ^
BayesReversePLLH.cpp:567:7: warning: unused variable 'which1' [-Wunused-variable]
  567 |   int which1=0;
      |       ^~~~~~
BayesReversePLLH.cpp:572:10: warning: unused variable 'mean2' [-Wunused-variable]
  572 |   double mean2=0;
      |          ^~~~~
BayesReversePLLH.cpp:578:10: warning: unused variable 'mean1' [-Wunused-variable]
  578 |   double mean1=0;
      |          ^~~~~
BayesReversePLLH.cpp:579:10: warning: unused variable 'Con' [-Wunused-variable]
  579 |   double Con=0;
      |          ^~~
BayesReversePLLH.cpp:638:10: warning: unused variable 'bprop' [-Wunused-variable]
  638 |   double bprop=1;
      |          ^~~~~
BayesReversePLLH.cpp:639:10: warning: unused variable 'Intb' [-Wunused-variable]
  639 |   double Intb=1;
      |          ^~~~
BayesReversePLLH.cpp:640:10: warning: unused variable 'Numb' [-Wunused-variable]
  640 |   double Numb=2;
      |          ^~~~
BayesReversePLLH.cpp:644:10: warning: unused variable 'prob1' [-Wunused-variable]
  644 |   double prob1=0;
      |          ^~~~~
BayesReversePLLH.cpp:645:10: warning: unused variable 'med2' [-Wunused-variable]
  645 |   double med2=0;
      |          ^~~~
BayesReversePLLH.cpp: In function 'double LikePEHTrt(arma::vec, arma::vec, arma::vec, arma::vec, arma::vec, int, double)':
BayesReversePLLH.cpp:1125:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1125 |     for(m=0; m<Y.n_rows;m++){
      |              ~^~~~~~~~~
BayesReversePLLH.cpp: In function 'double LikePEHCOV(arma::vec, arma::vec, arma::mat, arma::vec, arma::vec, int, arma::vec)':
BayesReversePLLH.cpp:1168:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1168 |     for(m=0; m<Y.n_rows;m++){
      |              ~^~~~~~~~~
BayesReversePLLH.cpp: In function 'Rcpp::List BayesPiecewiseHazardTrt(arma::vec, arma::vec, arma::vec, double, int)':
BayesReversePLLH.cpp:1539:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
 1539 |       for(j=(Spot+1);j<(s.n_rows-1);j++){
      |                      ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:1546:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
 1546 |       for(j=(Spot+2);j<(lam.n_rows-1);j++){
      |                      ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:1636:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
 1636 |         for(j=Spot;j<(lam.n_rows-1);j++){
      |                    ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:1648:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
 1648 |       for(j=Spot; j<(s.n_rows-1);j++){
      |                   ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:1748:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1748 |       for(j=0;j<sstore.n_cols;j++){
      |               ~^~~~~~~~~~~~~~
BayesReversePLLH.cpp:1752:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1752 |       for(j=0;j<lamstore.n_cols;j++){
      |               ~^~~~~~~~~~~~~~~~
BayesReversePLLH.cpp:1238:7: warning: unused variable 'b' [-Wunused-variable]
 1238 |   int b=0;
      |       ^
BayesReversePLLH.cpp:1246:10: warning: unused variable 'beta' [-Wunused-variable]
 1246 |   double beta = 1  ;
      |          ^~~~
BayesReversePLLH.cpp:1272:10: warning: unused variable 'betaprop' [-Wunused-variable]
 1272 |   double betaprop=0;
      |          ^~~~~~~~
BayesReversePLLH.cpp:1275:10: warning: unused variable 'svar' [-Wunused-variable]
 1275 |   double svar=1;
      |          ^~~~
BayesReversePLLH.cpp:1276:10: warning: unused variable 'Ints' [-Wunused-variable]
 1276 |   double Ints=1;
      |          ^~~~
BayesReversePLLH.cpp:1277:10: warning: unused variable 'Nums' [-Wunused-variable]
 1277 |   double Nums=2;
      |          ^~~~
BayesReversePLLH.cpp:1281:10: warning: unused variable 'mean1' [-Wunused-variable]
 1281 |   double mean1=0;
      |          ^~~~~
BayesReversePLLH.cpp:1282:10: warning: unused variable 'Con' [-Wunused-variable]
 1282 |   double Con=0;
      |          ^~~
BayesReversePLLH.cpp:1303:7: warning: unused variable 'which1' [-Wunused-variable]
 1303 |   int which1=0;
      |       ^~~~~~
BayesReversePLLH.cpp:1308:10: warning: unused variable 'bprop' [-Wunused-variable]
 1308 |   double bprop=1;
      |          ^~~~~
BayesReversePLLH.cpp:1309:10: warning: unused variable 'Intb' [-Wunused-variable]
 1309 |   double Intb=1;
      |          ^~~~
BayesReversePLLH.cpp:1310:10: warning: unused variable 'Numb' [-Wunused-variable]
 1310 |   double Numb=2;
      |          ^~~~
BayesReversePLLH.cpp:1314:10: warning: unused variable 'prob1' [-Wunused-variable]
 1314 |   double prob1=0;
      |          ^~~~~
BayesReversePLLH.cpp:1315:10: warning: unused variable 'med2' [-Wunused-variable]
 1315 |   double med2=0;
      |          ^~~~
BayesReversePLLH.cpp: In function 'Rcpp::List BayesPiecewiseHazardCOV(arma::vec, arma::vec, arma::mat, double, int)':
BayesReversePLLH.cpp:1997:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 1997 |   for(j=0;j<COV.n_cols;j++){
      |           ~^~~~~~~~~~~
BayesReversePLLH.cpp:2034:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2034 |       for(j=0;j<COV.n_cols;j++){
      |               ~^~~~~~~~~~~
BayesReversePLLH.cpp:2195:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
 2195 |       for(j=(Spot+1);j<(s.n_rows-1);j++){
      |                      ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:2202:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
 2202 |       for(j=(Spot+2);j<(lam.n_rows-1);j++){
      |                      ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:2292:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
 2292 |         for(j=Spot;j<(lam.n_rows-1);j++){
      |                    ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:2304:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
 2304 |       for(j=Spot; j<(s.n_rows-1);j++){
      |                   ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:2382:14: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2382 |     for(j=0;j<COV.n_cols;j++){
      |             ~^~~~~~~~~~~
BayesReversePLLH.cpp:2409:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2409 |       for(j=0;j<sstore.n_cols;j++){
      |               ~^~~~~~~~~~~~~~
BayesReversePLLH.cpp:2413:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2413 |       for(j=0;j<lamstore.n_cols;j++){
      |               ~^~~~~~~~~~~~~~~~
BayesReversePLLH.cpp:2419:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2419 |       for(j=0;j<COV.n_cols;j++){
      |               ~^~~~~~~~~~~
BayesReversePLLH.cpp:1880:7: warning: unused variable 'b' [-Wunused-variable]
 1880 |   int b=0;
      |       ^
BayesReversePLLH.cpp:1881:7: warning: unused variable 'k' [-Wunused-variable]
 1881 |   int k=0;
      |       ^
BayesReversePLLH.cpp:1888:10: warning: unused variable 'beta' [-Wunused-variable]
 1888 |   double beta = 1  ;
      |          ^~~~
BayesReversePLLH.cpp:1914:10: warning: unused variable 'betaprop' [-Wunused-variable]
 1914 |   double betaprop=0;
      |          ^~~~~~~~
BayesReversePLLH.cpp:1917:10: warning: unused variable 'svar' [-Wunused-variable]
 1917 |   double svar=1;
      |          ^~~~
BayesReversePLLH.cpp:1918:10: warning: unused variable 'Ints' [-Wunused-variable]
 1918 |   double Ints=1;
      |          ^~~~
BayesReversePLLH.cpp:1919:10: warning: unused variable 'Nums' [-Wunused-variable]
 1919 |   double Nums=2;
      |          ^~~~
BayesReversePLLH.cpp:1921:10: warning: unused variable 'mean2' [-Wunused-variable]
 1921 |   double mean2=0;
      |          ^~~~~
BayesReversePLLH.cpp:1923:10: warning: unused variable 'mean1' [-Wunused-variable]
 1923 |   double mean1=0;
      |          ^~~~~
BayesReversePLLH.cpp:1924:10: warning: unused variable 'Con' [-Wunused-variable]
 1924 |   double Con=0;
      |          ^~~
BayesReversePLLH.cpp:1945:7: warning: unused variable 'which1' [-Wunused-variable]
 1945 |   int which1=0;
      |       ^~~~~~
BayesReversePLLH.cpp:1950:10: warning: unused variable 'bprop' [-Wunused-variable]
 1950 |   double bprop=1;
      |          ^~~~~
BayesReversePLLH.cpp:1951:10: warning: unused variable 'Intb' [-Wunused-variable]
 1951 |   double Intb=1;
      |          ^~~~
BayesReversePLLH.cpp:1952:10: warning: unused variable 'Numb' [-Wunused-variable]
 1952 |   double Numb=2;
      |          ^~~~
BayesReversePLLH.cpp:1956:10: warning: unused variable 'prob1' [-Wunused-variable]
 1956 |   double prob1=0;
      |          ^~~~~
BayesReversePLLH.cpp:1957:10: warning: unused variable 'med2' [-Wunused-variable]
 1957 |   double med2=0;
      |          ^~~~
BayesReversePLLH.cpp: In function 'Rcpp::List BayesPiecewiseLinearLogHazardCOV(arma::vec, arma::vec, arma::mat, double, int)':
BayesReversePLLH.cpp:2613:12: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2613 |   for(j=0;j<COV.n_cols;j++){
      |           ~^~~~~~~~~~~
BayesReversePLLH.cpp:2652:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2652 |       for(j=0;j<COV.n_cols;j++){
      |               ~^~~~~~~~~~~
BayesReversePLLH.cpp:2835:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
 2835 |         for(j=Spot;j<(lam.n_rows-1);j++){
      |                    ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:2842:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
 2842 |       for(j=Spot; j<(s.n_rows-1);j++){
      |                   ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:2907:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
 2907 |       for(j=(Spot+1);j<(s.n_rows-1);j++){
      |                      ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:2912:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
 2912 |       for(j=(Spot+1);j<(lam.n_rows-1);j++){
      |                      ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:2948:14: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2948 |     for(j=0;j<COV.n_cols;j++){
      |             ~^~~~~~~~~~~
BayesReversePLLH.cpp:2976:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2976 |       for(j=0;j<sstore.n_cols;j++){
      |               ~^~~~~~~~~~~~~~
BayesReversePLLH.cpp:2980:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2980 |       for(j=0;j<lamstore.n_cols;j++){
      |               ~^~~~~~~~~~~~~~~~
BayesReversePLLH.cpp:2986:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 2986 |       for(j=0;j<COV.n_cols;j++){
      |               ~^~~~~~~~~~~
BayesReversePLLH.cpp:2490:7: warning: unused variable 'b' [-Wunused-variable]
 2490 |   int b=0;
      |       ^
BayesReversePLLH.cpp:2491:7: warning: unused variable 'k' [-Wunused-variable]
 2491 |   int k=0;
      |       ^
BayesReversePLLH.cpp:2498:10: warning: unused variable 'beta' [-Wunused-variable]
 2498 |   double beta = 1  ;
      |          ^~~~
BayesReversePLLH.cpp:2524:10: warning: unused variable 'betaprop' [-Wunused-variable]
 2524 |   double betaprop=0;
      |          ^~~~~~~~
BayesReversePLLH.cpp:2527:10: warning: unused variable 'svar' [-Wunused-variable]
 2527 |   double svar=1;
      |          ^~~~
BayesReversePLLH.cpp:2528:10: warning: unused variable 'Ints' [-Wunused-variable]
 2528 |   double Ints=1;
      |          ^~~~
BayesReversePLLH.cpp:2529:10: warning: unused variable 'Nums' [-Wunused-variable]
 2529 |   double Nums=2;
      |          ^~~~
BayesReversePLLH.cpp:2531:10: warning: unused variable 'mean2' [-Wunused-variable]
 2531 |   double mean2=0;
      |          ^~~~~
BayesReversePLLH.cpp:2533:10: warning: unused variable 'mean1' [-Wunused-variable]
 2533 |   double mean1=0;
      |          ^~~~~
BayesReversePLLH.cpp:2534:10: warning: unused variable 'Con' [-Wunused-variable]
 2534 |   double Con=0;
      |          ^~~
BayesReversePLLH.cpp:2555:7: warning: unused variable 'which1' [-Wunused-variable]
 2555 |   int which1=0;
      |       ^~~~~~
BayesReversePLLH.cpp:2560:10: warning: unused variable 'bprop' [-Wunused-variable]
 2560 |   double bprop=1;
      |          ^~~~~
BayesReversePLLH.cpp:2561:10: warning: unused variable 'Intb' [-Wunused-variable]
 2561 |   double Intb=1;
      |          ^~~~
BayesReversePLLH.cpp:2562:10: warning: unused variable 'Numb' [-Wunused-variable]
 2562 |   double Numb=2;
      |          ^~~~
BayesReversePLLH.cpp:2566:10: warning: unused variable 'prob1' [-Wunused-variable]
 2566 |   double prob1=0;
      |          ^~~~~
BayesReversePLLH.cpp:2567:10: warning: unused variable 'med2' [-Wunused-variable]
 2567 |   double med2=0;
      |          ^~~~
BayesReversePLLH.cpp: In function 'double LikePEH(arma::vec, arma::vec, arma::vec, arma::vec, int)':
BayesReversePLLH.cpp:3025:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3025 |     for(m=0; m<Y.n_rows;m++){
      |              ~^~~~~~~~~
BayesReversePLLH.cpp: In function 'Rcpp::List BayesPiecewiseHazard(arma::vec, arma::vec, double, int)':
BayesReversePLLH.cpp:3337:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
 3337 |       for(j=(Spot+1);j<(s.n_rows-1);j++){
      |                      ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:3344:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
 3344 |       for(j=(Spot+2);j<(lam.n_rows-1);j++){
      |                      ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:3434:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
 3434 |         for(j=Spot;j<(lam.n_rows-1);j++){
      |                    ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:3446:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
 3446 |       for(j=Spot; j<(s.n_rows-1);j++){
      |                   ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:3525:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3525 |       for(j=0;j<sstore.n_cols;j++){
      |               ~^~~~~~~~~~~~~~
BayesReversePLLH.cpp:3529:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3529 |       for(j=0;j<lamstore.n_cols;j++){
      |               ~^~~~~~~~~~~~~~~~
BayesReversePLLH.cpp:3092:7: warning: unused variable 'b' [-Wunused-variable]
 3092 |   int b=0;
      |       ^
BayesReversePLLH.cpp:3100:10: warning: unused variable 'beta' [-Wunused-variable]
 3100 |   double beta = 1  ;
      |          ^~~~
BayesReversePLLH.cpp:3122:10: warning: unused variable 'betaprop' [-Wunused-variable]
 3122 |   double betaprop=0;
      |          ^~~~~~~~
BayesReversePLLH.cpp:3125:10: warning: unused variable 'svar' [-Wunused-variable]
 3125 |   double svar=1;
      |          ^~~~
BayesReversePLLH.cpp:3126:10: warning: unused variable 'Ints' [-Wunused-variable]
 3126 |   double Ints=1;
      |          ^~~~
BayesReversePLLH.cpp:3127:10: warning: unused variable 'Nums' [-Wunused-variable]
 3127 |   double Nums=2;
      |          ^~~~
BayesReversePLLH.cpp:3131:10: warning: unused variable 'mean1' [-Wunused-variable]
 3131 |   double mean1=0;
      |          ^~~~~
BayesReversePLLH.cpp:3132:10: warning: unused variable 'Con' [-Wunused-variable]
 3132 |   double Con=0;
      |          ^~~
BayesReversePLLH.cpp:3153:7: warning: unused variable 'which1' [-Wunused-variable]
 3153 |   int which1=0;
      |       ^~~~~~
BayesReversePLLH.cpp:3158:10: warning: unused variable 'bprop' [-Wunused-variable]
 3158 |   double bprop=1;
      |          ^~~~~
BayesReversePLLH.cpp:3159:10: warning: unused variable 'Intb' [-Wunused-variable]
 3159 |   double Intb=1;
      |          ^~~~
BayesReversePLLH.cpp:3160:10: warning: unused variable 'Numb' [-Wunused-variable]
 3160 |   double Numb=2;
      |          ^~~~
BayesReversePLLH.cpp:3164:10: warning: unused variable 'prob1' [-Wunused-variable]
 3164 |   double prob1=0;
      |          ^~~~~
BayesReversePLLH.cpp:3165:10: warning: unused variable 'med2' [-Wunused-variable]
 3165 |   double med2=0;
      |          ^~~~
BayesReversePLLH.cpp: In function 'double LikePLLH(arma::vec, arma::vec, arma::vec, arma::vec, int)':
BayesReversePLLH.cpp:3609:15: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 3609 |     for(m=0; m<Y.n_rows;m++){
      |              ~^~~~~~~~~
BayesReversePLLH.cpp: In function 'Rcpp::List BayesPiecewiseLinearLogHazard(arma::vec, arma::vec, double, int)':
BayesReversePLLH.cpp:4031:21: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
 4031 |         for(j=Spot;j<(lam.n_rows-1);j++){
      |                    ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:4038:20: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
 4038 |       for(j=Spot; j<(s.n_rows-1);j++){
      |                   ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:4103:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
 4103 |       for(j=(Spot+1);j<(s.n_rows-1);j++){
      |                      ~^~~~~~~~~~~~~
BayesReversePLLH.cpp:4108:23: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
 4108 |       for(j=(Spot+1);j<(lam.n_rows-1);j++){
      |                      ~^~~~~~~~~~~~~~~
BayesReversePLLH.cpp:4152:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 4152 |       for(j=0;j<sstore.n_cols;j++){
      |               ~^~~~~~~~~~~~~~
BayesReversePLLH.cpp:4155:16: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
 4155 |       for(j=0;j<lamstore.n_cols;j++){
      |               ~^~~~~~~~~~~~~~~~
BayesReversePLLH.cpp:3680:10: warning: unused variable 'PSpike' [-Wunused-variable]
 3680 |   double PSpike=PSlab/(1-PSlab);
      |          ^~~~~~
BayesReversePLLH.cpp:3686:7: warning: unused variable 'b' [-Wunused-variable]
 3686 |   int b=0;
      |       ^
BayesReversePLLH.cpp:3687:7: warning: unused variable 'k' [-Wunused-variable]
 3687 |   int k=0;
      |       ^
BayesReversePLLH.cpp:3727:7: warning: unused variable 'which1' [-Wunused-variable]
 3727 |   int which1=0;
      |       ^~~~~~
BayesReversePLLH.cpp:3732:10: warning: unused variable 'mean2' [-Wunused-variable]
 3732 |   double mean2=0;
      |          ^~~~~
BayesReversePLLH.cpp:3738:10: warning: unused variable 'mean1' [-Wunused-variable]
 3738 |   double mean1=0;
      |          ^~~~~
BayesReversePLLH.cpp:3739:10: warning: unused variable 'Con' [-Wunused-variable]
 3739 |   double Con=0;
      |          ^~~
BayesReversePLLH.cpp:3798:10: warning: unused variable 'bprop' [-Wunused-variable]
 3798 |   double bprop=1;
      |          ^~~~~
BayesReversePLLH.cpp:3799:10: warning: unused variable 'Intb' [-Wunused-variable]
 3799 |   double Intb=1;
      |          ^~~~
BayesReversePLLH.cpp:3800:10: warning: unused variable 'Numb' [-Wunused-variable]
 3800 |   double Numb=2;
      |          ^~~~
BayesReversePLLH.cpp:3804:10: warning: unused variable 'prob1' [-Wunused-variable]
 3804 |   double prob1=0;
      |          ^~~~~
BayesReversePLLH.cpp:3805:10: warning: unused variable 'med2' [-Wunused-variable]
 3805 |   double med2=0;
      |          ^~~~
g++  -std=gnu++11 -I"D:/RCompile/recent/R-4.4.3/include" -DNDEBUG  -I'D:/RCompile/CRANpkg/lib/4.4/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.4/RcppArmadillo/include'   -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include"  -fopenmp    -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -shared -s -static-libgcc -o BayesReversePLLH.dll tmp.def BayesReversePLLH.o RcppExports.o -fopenmp -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRlapack -LD:/RCompile/recent/R-4.4.3/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R-4.4.3/bin/x64 -lR
make[1]: Leaving directory '/d/temp/2025_07_18_01_50_00_13420/RtmpiU5D3w/R.INSTALLecd833f59b3/BayesReversePLLH/src'
make[1]: Entering directory '/d/temp/2025_07_18_01_50_00_13420/RtmpiU5D3w/R.INSTALLecd833f59b3/BayesReversePLLH/src'
make[1]: Leaving directory '/d/temp/2025_07_18_01_50_00_13420/RtmpiU5D3w/R.INSTALLecd833f59b3/BayesReversePLLH/src'
installing to d:/Rcompile/CRANpkg/lib/4.4/00LOCK-BayesReversePLLH/00new/BayesReversePLLH/libs/x64
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'BayesReversePLLH' as BayesReversePLLH_1.5.zip
* DONE (BayesReversePLLH)