- using R version 3.6.3 (2020-02-29)
- using platform: x86_64-w64-mingw32 (64-bit)
- using session charset: ISO8859-1
- checking for file 'tramME/DESCRIPTION' ... OK
- this is package 'tramME' version '0.0.3'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'tramME' can be installed ... OK
- checking installed package size ... NOTE
installed size is 20.6Mb
sub-directories of 1Mb or more:
libs 19.7Mb
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- loading checks for arch 'i386'
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- loading checks for arch 'x64'
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [12s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compiled code ... OK
- checking sizes of PDF files under 'inst/doc' ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ...
- running examples for arch 'i386' ... [22s] OK
- running examples for arch 'x64' ... [23s] OK
- checking for unstated dependencies in 'tests' ... OK
- checking tests ...
- running tests for arch 'i386' ... [42s] OK
Running 'LmME.R' [4s]
Comparing 'LmME.Rout' to 'LmME.Rout.save' ...15,19d14
< Warning message:
< In checkMatrixPackageVersion() : Package version inconsistency detected.
< TMB was built with Matrix version 1.3.2
< Current Matrix version is 1.2.18
< Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
Running 'basics.R' [4s]
Comparing 'basics.Rout' to 'basics.Rout.save' ... OK
Running 'methods.R' [14s]
Comparing 'methods.Rout' to 'methods.Rout.save' ... OK
Running 'predict.R' [12s]
Comparing 'predict.Rout' to 'predict.Rout.save' ...11,15d10
< Warning message:
< In checkMatrixPackageVersion() : Package version inconsistency detected.
< TMB was built with Matrix version 1.3.2
< Current Matrix version is 1.2.18
< Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
Running 'simulate.R' [7s]
Comparing 'simulate.Rout' to 'simulate.Rout.save' ...11,15d10
< Warning message:
< In checkMatrixPackageVersion() : Package version inconsistency detected.
< TMB was built with Matrix version 1.3.2
< Current Matrix version is 1.2.18
< Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
Running 'test_util.R' [0s]
Comparing 'test_util.Rout' to 'test_util.Rout.save' ... OK
- running tests for arch 'x64' ... [43s] OK
Running 'LmME.R' [5s]
Comparing 'LmME.Rout' to 'LmME.Rout.save' ...15,19d14
< Warning message:
< In checkMatrixPackageVersion() : Package version inconsistency detected.
< TMB was built with Matrix version 1.3.2
< Current Matrix version is 1.2.18
< Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
Running 'basics.R' [4s]
Comparing 'basics.Rout' to 'basics.Rout.save' ... OK
Running 'methods.R' [14s]
Comparing 'methods.Rout' to 'methods.Rout.save' ... OK
Running 'predict.R' [11s]
Comparing 'predict.Rout' to 'predict.Rout.save' ...11,15d10
< Warning message:
< In checkMatrixPackageVersion() : Package version inconsistency detected.
< TMB was built with Matrix version 1.3.2
< Current Matrix version is 1.2.18
< Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
Running 'simulate.R' [8s]
Comparing 'simulate.Rout' to 'simulate.Rout.save' ...11,15d10
< Warning message:
< In checkMatrixPackageVersion() : Package version inconsistency detected.
< TMB was built with Matrix version 1.3.2
< Current Matrix version is 1.2.18
< Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
Running 'test_util.R' [0s]
Comparing 'test_util.Rout' to 'test_util.Rout.save' ... OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in 'inst/doc' ... OK
- checking re-building of vignette outputs ... [245s] OK
- checking PDF version of manual ... OK
- DONE
Status: 1 NOTE