Check results for 'photosynthesis'

using R version 4.1.3 (2022-03-10)
using platform: x86_64-w64-mingw32 (64-bit)
using session charset: ISO8859-1
checking for file 'photosynthesis/DESCRIPTION' ... OK
this is package 'photosynthesis' version '2.1.1'
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking whether package 'photosynthesis' can be installed ... OK
checking installed package size ... NOTE
  installed size is 7.1Mb
  sub-directories of 1Mb or more:
    doc 6.1Mb
checking package directory ... OK
checking 'build' directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... OK
checking whether the package can be loaded with stated dependencies ... OK
checking whether the package can be unloaded cleanly ... OK
checking whether the namespace can be loaded with stated dependencies ... OK
checking whether the namespace can be unloaded cleanly ... OK
checking loading without being on the library search path ... OK
checking use of S3 registration ... OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [16s] OK
checking Rd files ... [1s] OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of 'data' directory ... OK
checking data for non-ASCII characters ... OK
checking LazyData ... OK
checking data for ASCII and uncompressed saves ... OK
checking installed files from 'inst/doc' ... OK
checking files in 'vignettes' ... OK
checking examples ... [26s] OK
checking for unstated dependencies in 'tests' ... OK
checking tests ... [70s] ERROR
  Running 'testthat.R' [70s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > library(testthat)
  > library(photosynthesis)
  Loading required package: ggplot2
  Loading required package: minpack.lm
  Loading required package: units
  udunits database from D:/temp/RtmpiiNsRX/RLIBS_44146cdb5bb6/units/share/udunits/udunits2.xml
  >
  > test_check("photosynthesis")
  You may need to revise .vars argument by replacing `var_name1`, etc. with variable name in your_data:

  fit_photosynthesis(
    .data = your_data,
    .photo_fun = 'aq_response',
    .model = 'marshall_biscoe_1980',
    .method = 'ls',
    .vars = list(
      .A = var_name1,
      .Q = var_name1
    ),
    ...
  )
  You may need to revise .vars argument by replacing `var_name1`, etc. with variable name in your_data:

  fit_photosynthesis(
    .data = your_data,
    .photo_fun = 'aq_response',
    .model = 'marshall_biscoe_1980',
    .method = 'ls',
    .vars = list(
      .A = var_name1,
      .Q = var_name1
    ),
    ...
  )
  You may need to revise .vars argument by replacing `var_name1`, etc. with variable name in your_data:

  fit_photosynthesis(
    .data = your_data,
    .photo_fun = 'aq_response',
    .model = 'marshall_biscoe_1980',
    .method = 'ls',
    .vars = list(
      .A = var_name1,
      .Q = var_name2
    ),
    ...
  )

    |
    | | 0%
    |
    |=================================== | 50%
    |
    |======================================================================| 100%[ FAIL 6 | WARN 2 | SKIP 0 | PASS 320 ]

  == Failed tests ================================================================
  -- Failure ('test-fit_aq_response2.R:12:3'): 'fit_photosynthesis()' accepts data.frames and tibbles --
  Expected `{ ... }` to run without any conditions.
  i Actually got a <lifecycle_stage>:
    Condition:
    `flatten()` is deprecated as of rlang 1.1.0. i Please use
    `purrr::list_flatten()` or `purrr::list_c()`.
  -- Failure ('test-fit_aq_response2.R:13:3'): 'fit_photosynthesis()' accepts data.frames and tibbles --
  Expected `{ ... }` to run without any conditions.
  i Actually got a <lifecycle_stage>:
    Condition:
    `flatten()` is deprecated as of rlang 1.1.0. i Please use
    `purrr::list_flatten()` or `purrr::list_c()`.
  -- Failure ('test-fit_aq_response2.R:31:3'): .vars argument renames variables --
  Expected `{ ... }` to run without any conditions.
  i Actually got a <lifecycle_stage>:
    Condition:
    `flatten()` is deprecated as of rlang 1.1.0. i Please use
    `purrr::list_flatten()` or `purrr::list_c()`.
  -- Failure ('test-fit_aq_response2.R:34:3'): .vars argument renames variables --
  Expected `{ ... }` to run without any conditions.
  i Actually got a <lifecycle_stage>:
    Condition:
    `flatten()` is deprecated as of rlang 1.1.0. i Please use
    `purrr::list_flatten()` or `purrr::list_c()`.
  -- Failure ('test-fit_aq_response2.R:37:3'): .vars argument renames variables --
  Expected `{ ... }` to run without any conditions.
  i Actually got a <lifecycle_stage>:
    Condition:
    `flatten()` is deprecated as of rlang 1.1.0. i Please use
    `purrr::list_flatten()` or `purrr::list_c()`.
  -- Failure ('test-fit_aq_response2.R:44:3'): .vars argument renames variables --
  Expected `{ ... }` to run without any conditions.
  i Actually got a <lifecycle_stage>:
    Condition:
    `flatten()` is deprecated as of rlang 1.1.0. i Please use
    `purrr::list_flatten()` or `purrr::list_c()`.

  [ FAIL 6 | WARN 2 | SKIP 0 | PASS 320 ]
  Error: Test failures
  Execution halted
checking for unstated dependencies in vignettes ... OK
checking package vignettes in 'inst/doc' ... OK
checking re-building of vignette outputs ... [140s] OK
checking PDF version of manual ... OK
DONE

Status: 1 ERROR, 1 NOTE