- using R version 4.1.3 (2022-03-10)
- using platform: x86_64-w64-mingw32 (64-bit)
- using session charset: ISO8859-1
- checking for file 'molic/DESCRIPTION' ... OK
- this is package 'molic' version '2.0.3'
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking whether package 'molic' can be installed ... OK
- checking installed package size ... NOTE
installed size is 5.2Mb
sub-directories of 1Mb or more:
extdata 1.6Mb
libs 2.4Mb
- checking package directory ... OK
- checking 'build' directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
- loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
** checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [4s] OK
- checking Rd files ... [1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of 'data' directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compiled code ... OK
- checking installed files from 'inst/doc' ... OK
- checking files in 'vignettes' ... OK
- checking examples ...
** running examples for arch 'i386' ... [17s] OK
** running examples for arch 'x64' ... [18s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in 'inst/doc' ... OK
- checking re-building of vignette outputs ... [82s] WARNING
Error(s) in re-building vignettes:
--- re-building 'dermatitis.Rmd' using rmarkdown
--- finished re-building 'dermatitis.Rmd'
--- re-building 'genetic_example.Rmd' using rmarkdown
Quitting from lines 60-61 (genetic_example.Rmd)
Error: processing vignette 'genetic_example.Rmd' failed with diagnostics:
The `n_extra` argument of `print()` was deprecated in pillar 1.6.2 and
is now defunct.
i Please use the `max_extra_cols` argument instead.
--- failed re-building 'genetic_example.Rmd'
--- re-building 'outlier_intro.Rmd' using rmarkdown
--- finished re-building 'outlier_intro.Rmd'
SUMMARY: processing the following file failed:
'genetic_example.Rmd'
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... OK
- DONE
Status: 1 WARNING, 1 NOTE