• using R version 3.5.3 (2019-03-11)
• using platform: x86_64-w64-mingw32 (64-bit)
• using session charset: ISO8859-1
• checking for file 'SDMtune/DESCRIPTION' ... OK
• checking extension type ... Package
• this is package 'SDMtune' version '0.2.1'
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking whether package 'SDMtune' can be installed ... OK
• checking installed package size ... OK
• checking package directory ... OK
• checking 'build' directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• loading checks for arch 'i386'
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking loading without being on the library search path ... OK
  • checking use of S3 registration ... OK
• loading checks for arch 'x64'
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking loading without being on the library search path ... OK
  • checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [19s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of 'data' directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking R/sysdata.rda ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compiled code ... OK
• checking installed files from 'inst/doc' ... OK
• checking files in 'vignettes' ... OK
• checking examples ...
  • running examples for arch 'i386' ... ERROR
    Running examples in 'SDMtune-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: aicc
    > ### Title: AICc
    > ### Aliases: aicc
    >
    > ### ** Examples
    >
    > # Acquire environmental variables
    > files <- list.files(path = file.path(system.file(package = "dismo"), "ex"),
    + pattern = "grd", full.names = TRUE)
    > predictors <- raster::stack(files)
    >
    > # Prepare presence and background locations
    > p_coords <- virtualSp$presence
    > bg_coords <- virtualSp$background
    >
    > # Create SWD object
    > data <- prepareSWD(species = "Virtual species", p = p_coords, a = bg_coords,
    + env = predictors, categorical = "biome")
    Extracting predictor information for presence locations...
    Extracting predictor information for absence/background locations...
    >
    > # Train a model
    > model <- train(method = "Maxnet", data = data, fc = "l")
    Error in get(fun, mode = "function", envir = parent.frame()) :
      object 'trainMaxnet' of mode 'function' was not found
    Calls: train -> do.call -> %in% -> formalArgs -> formals -> get
    Execution halted
  • running examples for arch 'x64' ... ERROR
    Running examples in 'SDMtune-Ex.R' failed
    The error most likely occurred in:
    
    > ### Name: aicc
    > ### Title: AICc
    > ### Aliases: aicc
    >
    > ### ** Examples
    >
    > # Acquire environmental variables
    > files <- list.files(path = file.path(system.file(package = "dismo"), "ex"),
    + pattern = "grd", full.names = TRUE)
    > predictors <- raster::stack(files)
    >
    > # Prepare presence and background locations
    > p_coords <- virtualSp$presence
    > bg_coords <- virtualSp$background
    >
    > # Create SWD object
    > data <- prepareSWD(species = "Virtual species", p = p_coords, a = bg_coords,
    + env = predictors, categorical = "biome")
    Extracting predictor information for presence locations...
    Extracting predictor information for absence/background locations...
    >
    > # Train a model
    > model <- train(method = "Maxnet", data = data, fc = "l")
    Error in get(fun, mode = "function", envir = parent.frame()) :
      object 'trainMaxnet' of mode 'function' was not found
    Calls: train -> do.call -> %in% -> formalArgs -> formals -> get
    Execution halted
• checking for unstated dependencies in 'tests' ... OK
• checking tests ...
  • running tests for arch 'i386' ... [24s] ERROR
      Running 'spelling.R' [0s]
      Running 'testthat.R' [22s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
      > library(testthat)
      > library(SDMtune)
      
         _____ ____ __ ___ __
        / ___/ / __ \ / |/ // /_ __ __ ____ ___
        \__ \ / / / // /|_/ // __// / / // __ \ / _ \
       ___/ // /_/ // / / // /_ / /_/ // / / // __/
      /____//_____//_/ /_/ \__/ \__,_//_/ /_/ \___/ version 0.2.1
      
      To cite this package in publications type: citation("SDMtune").
      >
      > test_check("SDMtune")
      -- 1. Error: (unknown) (@test-utils.R#5) --------------------------------------
      object 'trainANN' of mode 'function' was not found
      Backtrace:
       1. SDMtune::train("ANN", data = data, size = 10)
       4. methods::formalArgs(f)
       5. base::formals(def)
       6. base::get(fun, mode = "function", envir = parent.frame())
      
      == testthat results ===========================================================
      [ OK: 353 | SKIPPED: 29 | WARNINGS: 0 | FAILED: 1 ]
      1. Error: (unknown) (@test-utils.R#5)
      
      Error: testthat unit tests failed
      Execution halted
  • running tests for arch 'x64' ... [25s] ERROR
      Running 'spelling.R' [0s]
      Running 'testthat.R' [24s]
    Running the tests in 'tests/testthat.R' failed.
    Complete output:
      > library(testthat)
      > library(SDMtune)
      
         _____ ____ __ ___ __
        / ___/ / __ \ / |/ // /_ __ __ ____ ___
        \__ \ / / / // /|_/ // __// / / // __ \ / _ \
       ___/ // /_/ // / / // /_ / /_/ // / / // __/
      /____//_____//_/ /_/ \__/ \__,_//_/ /_/ \___/ version 0.2.1
      
      To cite this package in publications type: citation("SDMtune").
      >
      > test_check("SDMtune")
      -- 1. Error: (unknown) (@test-utils.R#5) --------------------------------------
      object 'trainANN' of mode 'function' was not found
      Backtrace:
       1. SDMtune::train("ANN", data = data, size = 10)
       4. methods::formalArgs(f)
       5. base::formals(def)
       6. base::get(fun, mode = "function", envir = parent.frame())
      
      == testthat results ===========================================================
      [ OK: 353 | SKIPPED: 29 | WARNINGS: 0 | FAILED: 1 ]
      1. Error: (unknown) (@test-utils.R#5)
      
      Error: testthat unit tests failed
      Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in 'inst/doc' ... OK
• checking re-building of vignette outputs ... [5s] OK
• checking PDF version of manual ... OK
• DONE

Status: 4 ERRORs