• using R version 3.6.2 (2019-12-12)
  • using platform: x86_64-apple-darwin15.6.0 (64-bit)
  • using session charset: UTF-8
  • checking for file ‘sos4R/DESCRIPTION’ ... OK
  • checking extension type ... Package
  • this is package ‘sos4R’ version ‘0.4.2’
  • package encoding: UTF-8
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘sos4R’ can be installed ... [18s/18s] OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking ‘build’ directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking loading without being on the library search path ... OK
  • checking dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... [17s/17s] OK
  • checking Rd files ... OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking sizes of PDF files under ‘inst/doc’ ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking files in ‘vignettes’ ... OK
  • checking examples ... [2s/2s] OK
  • checking for unstated dependencies in ‘tests’ ... OK
  • checking tests ... [34s/34s] OK
      Running ‘testthat.R’ [34s/34s]
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in ‘inst/doc’ ... OK
  • checking running R code from vignettes ... [2s/2s] NONE
      ‘sos4R-vignette-02-ogc-sos.Rmd’using ‘UTF-8’... [0s/0s] OK
      ‘sos4R-vignette-03-sos-operations.Rmd’using ‘UTF-8’... [0s/0s] OK
      ‘sos4R-vignette-04-extensions.Rmd’using ‘UTF-8’... [0s/0s] OK
      ‘sos4R-vignette-05-wrapper-functions.Rmd’using ‘UTF-8’... [0s/0s] OK
      ‘sos4R.Rmd’using ‘UTF-8’... [0s/0s] OK
  • checking re-building of vignette outputs ... [522s/597s] WARNING
    Error(s) in re-building vignettes:
    --- re-building ‘sos4R-vignette-02-ogc-sos.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
      Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘sos4R-vignette-02-ogc-sos.Rmd’

    --- re-building ‘sos4R-vignette-03-sos-operations.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
      Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘sos4R-vignette-03-sos-operations.Rmd’

    --- re-building ‘sos4R-vignette-04-extensions.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
      Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    --- finished re-building ‘sos4R-vignette-04-extensions.Rmd’

    --- re-building ‘sos4R-vignette-05-wrapper-functions.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
      Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 161-164 (sos4R-vignette-05-wrapper-functions.Rmd)
    Error: processing vignette 'sos4R-vignette-05-wrapper-functions.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘sos4R-vignette-05-wrapper-functions.Rmd’

    --- re-building ‘sos4R.Rmd’ using rmarkdown
    Warning in engine$weave(file, quiet = quiet, encoding = enc) :
      Pandoc (>= 1.12.3) and/or pandoc-citeproc not available. Falling back to R Markdown v1.
    Quitting from lines 186-193 (sos4R.Rmd)
    Error: processing vignette 'sos4R.Rmd' failed with diagnostics:
    cannot open the connection
    --- failed re-building ‘sos4R.Rmd’

    SUMMARY: processing the following files failed:
      ‘sos4R-vignette-05-wrapper-functions.Rmd’ ‘sos4R.Rmd’

    Error: Vignette re-building failed.
    Execution halted
  • checking PDF version of manual ... OK
  • DONE
    Status: 1 WARNING