- using R version 3.6.0 beta (2019-04-15 r76395)
- using platform: x86_64-apple-darwin15.6.0 (64-bit)
- using session charset: UTF-8
- checking for file ‘dbConnect/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘dbConnect’ version ‘1.0’
- checking package namespace information ... OK
- checking package dependencies ... NOTE
Package suggested but not available for checking: ‘gWidgetsRGtk2’
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘dbConnect’ can be installed ... [5s/11s] OK
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking dependencies in R code ... NOTE
'library' or 'require' calls to packages already attached by Depends:
‘RMySQL’ ‘gWidgets’
Please remove these calls from your code.
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [6s/12s] NOTE
DatabaseConnect : dlgConnect: warning in ggroup(horizontal = FALSE,
cont = win): partial argument match of 'cont' to 'container'
DatabaseConnect : dlgConnect: warning in ggroup(vertical = TRUE,
horizontal = FALSE, cont = g): partial argument match of 'cont' to
'container'
DatabaseConnect : dlgConnect: warning in ggroup(horizontal = TRUE, cont
= connectionGroup): partial argument match of 'cont' to 'container'
DatabaseConnect : dlgConnect: warning in glabel(text = "Server Host: ",
cont = serverGroup): partial argument match of 'cont' to 'container'
DatabaseConnect : dlgConnect: warning in gedit(text =
"headnode.stat.iastate.edu", editable = T, cont = serverGroup, width
= 16): partial argument match of 'cont' to 'container'
DatabaseConnect : dlgConnect: warning in glabel(text = "Port: ", cont =
serverGroup): partial argument match of 'cont' to 'container'
DatabaseConnect : dlgConnect: warning in gedit(text = "3306", editable
= T, cont = serverGroup, width = 8): partial argument match of 'cont'
to 'container'
DatabaseConnect : dlgConnect: warning in glabel(text = "Username: ",
cont = userGroup): partial argument match of 'cont' to 'container'
DatabaseConnect : dlgConnect: warning in gedit(text = "2009Expo",
editable = T, width = 34, cont = userGroup): partial argument match
of 'cont' to 'container'
DatabaseConnect : dlgConnect: warning in glabel(text = "Password: ",
cont = pwdGroup): partial argument match of 'cont' to 'container'
DatabaseConnect : dlgConnect: warning in gedit(text = "R R0cks",
editable = T, width = 34, cont = pwdGroup): partial argument match of
'cont' to 'container'
DatabaseConnect : dlgConnect: warning in glabel(text = "Database: ",
cont = dbGroup): partial argument match of 'cont' to 'container'
DatabaseConnect : dlgConnect: warning in gedit(text = "data_expo_2009",
editable = T, width = 34, cont = dbGroup): partial argument match of
'cont' to 'container'
DatabaseConnect : dlgConnect: warning in ggroup(horizontal = TRUE, cont
= g): partial argument match of 'cont' to 'container'
DatabaseConnect : dlgConnect: warning in gbutton("Connect", cont =
buttonGroup, handler = function(h, ...) {: partial argument match of
'cont' to 'container'
DatabaseConnect : dlgConnect: warning in library(RMySQL): partial
argument match of 'cont' to 'container'
DatabaseConnect : dlgConnect: warning in .dbhistory <<-
paste(.dbhistory, "library(RMySQL)", sep = "\n"): partial argument
match of 'cont' to 'container'
DatabaseConnect : dlgConnect: warning in drv <- dbDriver("MySQL"):
partial argument match of 'cont' to 'container'
DatabaseConnect : dlgConnect: warning in .dbhistory <<-
paste(.dbhistory, "drv <- dbDriver(\"MySQL\")", sep = "\n"): partial
argument match of 'cont' to 'container'
DatabaseConnect : dlgConnect: warning in con <<- dbConnect(drv, user =
svalue(user), password = svalue(pwd), port =
as.numeric(svalue(port)), dbname = svalue(dbname), host =
svalue(server)): partial argument match of 'cont' to 'container'
DatabaseConnect : dlgConnect: warning in .dbhistory <<-
paste(.dbhistory, "\ncon <- dbConnect(drv, user = \"", svalue(user),
"\", password = \"", svalue(pwd), "\", port = ",
as.numeric(svalue(port)), ", dbname = \"", svalue(dbname), "\", host
= \"", svalue(server), "\")", sep = ""): partial argument match of
'cont' to 'container'
DatabaseConnect : dlgConnect: warning in svalue(okButton) <-
"Connected": partial argument match of 'cont' to 'container'
DatabaseConnect : dlgConnect: warning in dispose(win): partial argument
match of 'cont' to 'container'
DatabaseConnect : dlgConnect: warning in databaseViewer(con): partial
argument match of 'cont' to 'container'
DatabaseConnect : dlgConnect: warning in }): partial argument match of
'cont' to 'container'
DatabaseConnect : dlgConnect: warning in gbutton("Close", cont =
buttonGroup, handler = function(h, ...) {: partial argument match of
'cont' to 'container'
DatabaseConnect : databaseViewer : saveHist: warning in ggroup(hor = F,
cont = win): partial argument match of 'hor' to 'horizontal'
DatabaseConnect : databaseViewer : saveHist: warning in ggroup(hor = F,
cont = win): partial argument match of 'cont' to 'container'
DatabaseConnect : databaseViewer : saveHist: warning in ggroup(hor = T,
cont = gg): partial argument match of 'hor' to 'horizontal'
DatabaseConnect : databaseViewer : saveHist: warning in ggroup(hor = T,
cont = gg): partial argument match of 'cont' to 'container'
DatabaseConnect : databaseViewer : saveHist: warning in glabel("Save
history to file?", cont = g1): partial argument match of 'cont' to
'container'
DatabaseConnect : databaseViewer : saveHist: warning in glabel("Save in
directory:", cont = g2): partial argument match of 'cont' to
'container'
DatabaseConnect : databaseViewer : saveHist: warning in
gedit(paste(getwd()), expand = T, cont = g2): partial argument match
of 'cont' to 'container'
DatabaseConnect : databaseViewer : saveHist: warning in glabel("Save
as:", cont = g3): partial argument match of 'cont' to 'container'
DatabaseConnect : databaseViewer : saveHist: warning in
gedit("dbhistory.R", expand = T, cont = g3): partial argument match
of 'cont' to 'container'
DatabaseConnect : databaseViewer : saveHist: warning in gbutton("Save",
handler = function(h, ...) {: partial argument match of 'cont' to
'container'
DatabaseConnect : databaseViewer : saveHist: warning in cat(dbhist,
file = paste(svalue(dirline), "/", svalue(saveline), sep = "")):
partial argument match of 'cont' to 'container'
DatabaseConnect : databaseViewer : saveHist: warning in dispose(win):
partial argument match of 'cont' to 'container'
DatabaseConnect : databaseViewer : saveHist: warning in }, cont = g4):
partial argument match of 'cont' to 'container'
DatabaseConnect : databaseViewer : saveHist: warning in
gbutton("Cancel", handler = function(h, ...) {: partial argument
match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in ggroup(hor = F, cont =
mainWindow, expand = T): partial argument match of 'hor' to
'horizontal'
DatabaseConnect : databaseViewer: warning in ggroup(hor = F, cont =
mainWindow, expand = T): partial argument match of 'cont' to
'container'
DatabaseConnect : databaseViewer: warning in gnotebook(cont =
mainGroup, expand = T): partial argument match of 'cont' to
'container'
DatabaseConnect : databaseViewer: warning in ggroup(hor = F, cont =
.db$main$notebook, label = "Data Viewer", expand = T): partial
argument match of 'hor' to 'horizontal'
DatabaseConnect : databaseViewer: warning in ggroup(hor = F, cont =
.db$main$notebook, label = "Data Viewer", expand = T): partial
argument match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in ggroup(hor = F, cont =
.db$main$notebook, label = "Variable Browser", expand = T): partial
argument match of 'hor' to 'horizontal'
DatabaseConnect : databaseViewer: warning in ggroup(hor = F, cont =
.db$main$notebook, label = "Variable Browser", expand = T): partial
argument match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in ggroup(hor = T, cont =
.db$main$notebook, label = "Subsample", expand = T): partial argument
match of 'hor' to 'horizontal'
DatabaseConnect : databaseViewer: warning in ggroup(hor = T, cont =
.db$main$notebook, label = "Subsample", expand = T): partial argument
match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in ggroup(hor = F, cont =
.db$main$notebook, label = "Query", expand = T): partial argument
match of 'hor' to 'horizontal'
DatabaseConnect : databaseViewer: warning in ggroup(hor = F, cont =
.db$main$notebook, label = "Query", expand = T): partial argument
match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in gnotebook(cont =
.db$main$nbList$line$group, expand = T): partial argument match of
'cont' to 'container'
DatabaseConnect : databaseViewer: warning in ggroup(hor = F, cont =
.db$main$nbList$line$notebook, label = i, expand = T): partial
argument match of 'hor' to 'horizontal'
DatabaseConnect : databaseViewer: warning in ggroup(hor = F, cont =
.db$main$nbList$line$notebook, label = i, expand = T): partial
argument match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in ggroup(hor = T, cont =
.db$main$nbList$line$nbList[[i]]$group, expand = F): partial argument
match of 'hor' to 'horizontal'
DatabaseConnect : databaseViewer: warning in ggroup(hor = T, cont =
.db$main$nbList$line$nbList[[i]]$group, expand = F): partial argument
match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in glabel(tablename, cont =
.db$main$nbList$line$nbList[[i]]$infogroup): partial argument match
of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in glabel(tablerows, cont =
.db$main$nbList$line$nbList[[i]]$infogroup): partial argument match
of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in gnotebook(cont =
.db$main$nbList$variable$group, expand = T): partial argument match
of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in ggroup(hor = F, cont =
.db$main$nbList$variable$notebook, label = i, expand = T): partial
argument match of 'hor' to 'horizontal'
DatabaseConnect : databaseViewer: warning in ggroup(hor = F, cont =
.db$main$nbList$variable$notebook, label = i, expand = T): partial
argument match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in ggroup(hor = T, cont =
.db$main$nbList$variable$nbList[[i]]$group, expand = F): partial
argument match of 'hor' to 'horizontal'
DatabaseConnect : databaseViewer: warning in ggroup(hor = T, cont =
.db$main$nbList$variable$nbList[[i]]$group, expand = F): partial
argument match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in glabel(tablename, cont =
.db$main$nbList$variable$nbList[[i]]$infogroup): partial argument
match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in glabel(tablerows, cont =
.db$main$nbList$variable$nbList[[i]]$infogroup): partial argument
match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in gradio(.db$tables$usable,
hor = F): partial argument match of 'hor' to 'horizontal'
DatabaseConnect : databaseViewer: warning in gframe("Tables", hor = F,
expand = F, cont = .db$main$nbList$subsample$group): partial argument
match of 'hor' to 'horizontal'
DatabaseConnect : databaseViewer: warning in gframe("Tables", hor = F,
expand = F, cont = .db$main$nbList$subsample$group): partial argument
match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in ggroup(hor = F, expand =
F, cont = .db$main$nbList$subsample$group): partial argument match of
'hor' to 'horizontal'
DatabaseConnect : databaseViewer: warning in ggroup(hor = F, expand =
F, cont = .db$main$nbList$subsample$group): partial argument match of
'cont' to 'container'
DatabaseConnect : databaseViewer: warning in ggroup(hor = F, expand =
F, cont = .db$main$nbList$subsample$right$group): partial argument
match of 'hor' to 'horizontal'
DatabaseConnect : databaseViewer: warning in ggroup(hor = F, expand =
F, cont = .db$main$nbList$subsample$right$group): partial argument
match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in ggroup(hor = T, expand =
F, cont = .db$main$nbList$subsample$right$group): partial argument
match of 'hor' to 'horizontal'
DatabaseConnect : databaseViewer: warning in ggroup(hor = T, expand =
F, cont = .db$main$nbList$subsample$right$group): partial argument
match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in ggroup(hor = T, expand =
F, cont = .db$main$nbList$subsample$right$groupTop): partial argument
match of 'hor' to 'horizontal'
DatabaseConnect : databaseViewer: warning in ggroup(hor = T, expand =
F, cont = .db$main$nbList$subsample$right$groupTop): partial argument
match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in gbutton("Add Row", cont =
.db$main$nbList$subsample$right$groupBottom): partial argument match
of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in gbutton("Remove Row", cont
= .db$main$nbList$subsample$right$groupBottom): partial argument
match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in gbutton("Reset to
defaults", cont = .db$main$nbList$subsample$right$groupBottom):
partial argument match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in ggroup(hor = T, cont =
.db$main$nbList$subsample$right$groupBottom): partial argument match
of 'hor' to 'horizontal'
DatabaseConnect : databaseViewer: warning in ggroup(hor = T, cont =
.db$main$nbList$subsample$right$groupBottom): partial argument match
of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in glabel("Limit:", cont =
.db$main$nbList$subsample$right$top$limitGroup): partial argument
match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in gedit(.db$noLimit, cont =
.db$main$nbList$subsample$right$top$limitGroup): partial argument
match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in gbutton("Help", cont =
.db$main$nbList$subsample$right$groupBottom): partial argument match
of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in gbutton("Execute Query",
cont = .db$main$nbList$subsample$right$rows[[1]]$group): partial
argument match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in
gcombobox(.db$fields[[.db$tables$usable[1]]], cont =
.db$main$nbList$subsample$right$rows[[1]]$group): partial argument
match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in
gcombobox(.db$compareOptions, cont =
.db$main$nbList$subsample$right$rows[[1]]$group, width =
.db$optionComboBoxWidth): partial argument match of 'cont' to
'container'
DatabaseConnect : databaseViewer: warning in gedit(.db$initialValue,
cont = .db$main$nbList$subsample$right$rows[[1]]$group, expand = T):
partial argument match of 'cont' to 'container'
DatabaseConnect : databaseViewer : addRowHandler: warning in ggroup(hor
= T, expand = T, ): partial argument match of 'hor' to 'horizontal'
DatabaseConnect : databaseViewer : addRowHandler: warning in
gradio(c("AND", "OR"), hor = T, cont =
.db$main$nbList$subsample$right$rows[[i]]$group): partial argument
match of 'hor' to 'horizontal'
DatabaseConnect : databaseViewer : addRowHandler: warning in
gradio(c("AND", "OR"), hor = T, cont =
.db$main$nbList$subsample$right$rows[[i]]$group): partial argument
match of 'cont' to 'container'
DatabaseConnect : databaseViewer : addRowHandler: warning in
gcombobox(.db$fields[[currentTable]], cont =
.db$main$nbList$subsample$right$rows[[i]]$group): partial argument
match of 'cont' to 'container'
DatabaseConnect : databaseViewer : addRowHandler: warning in
gcombobox(.db$compareOptions, cont =
.db$main$nbList$subsample$right$rows[[i]]$group, width =
.db$optionComboBoxWidth): partial argument match of 'cont' to
'container'
DatabaseConnect : databaseViewer : addRowHandler: warning in
gedit(.db$initialValue, cont =
.db$main$nbList$subsample$right$rows[[i]]$group, expand = T): partial
argument match of 'cont' to 'container'
DatabaseConnect : databaseViewer : helpDialog: warning in ggroup(cont =
window, hor = F): partial argument match of 'hor' to 'horizontal'
DatabaseConnect : databaseViewer : helpDialog: warning in ggroup(cont =
window, hor = F): partial argument match of 'cont' to 'container'
DatabaseConnect : databaseViewer : helpDialog: warning in ggroup(hor =
F, expand = T, cont = group): partial argument match of 'hor' to
'horizontal'
DatabaseConnect : databaseViewer : helpDialog: warning in ggroup(hor =
F, expand = T, cont = group): partial argument match of 'cont' to
'container'
DatabaseConnect : databaseViewer : helpDialog: warning in
gtext(strwrap(message, wrap), cont = top.group, expand = T, editable
= F): partial argument match of 'cont' to 'container'
DatabaseConnect : databaseViewer : helpDialog: warning in ggroup(hor =
T, expand = F, cont = group): partial argument match of 'hor' to
'horizontal'
DatabaseConnect : databaseViewer : helpDialog: warning in ggroup(hor =
T, expand = F, cont = group): partial argument match of 'cont' to
'container'
DatabaseConnect : databaseViewer : helpDialog: warning in gbutton("ok",
expand = T, handler = function(h, ...) {: partial argument match of
'cont' to 'container'
DatabaseConnect : databaseViewer : helpDialog: warning in
dispose(window): partial argument match of 'cont' to 'container'
DatabaseConnect : databaseViewer : helpDialog: warning in }, cont =
bottom.group): partial argument match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in ggroup(hor = T, cont =
.db$main$nbList$query$group): partial argument match of 'hor' to
'horizontal'
DatabaseConnect : databaseViewer: warning in ggroup(hor = T, cont =
.db$main$nbList$query$group): partial argument match of 'cont' to
'container'
DatabaseConnect : databaseViewer: warning in ggroup(hor = T, cont =
.db$main$nbList$query$queryLine$group): partial argument match of
'hor' to 'horizontal'
DatabaseConnect : databaseViewer: warning in ggroup(hor = T, cont =
.db$main$nbList$query$queryLine$group): partial argument match of
'cont' to 'container'
DatabaseConnect : databaseViewer: warning in gbutton("Run following
query:", cont = .db$main$nbList$query$queryLine$leftGroup, ): partial
argument match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in gedit(starttext, cont =
.db$main$nbList$query$queryLine$group, expand = T): partial argument
match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in ggroup(hor = T, cont =
.db$main$nbList$query$tabLine$group): partial argument match of 'hor'
to 'horizontal'
DatabaseConnect : databaseViewer: warning in ggroup(hor = T, cont =
.db$main$nbList$query$tabLine$group): partial argument match of
'cont' to 'container'
DatabaseConnect : databaseViewer: warning in glabel("Tab Name: ", cont
= .db$main$nbList$query$tabLine$leftGroup): partial argument match of
'cont' to 'container'
DatabaseConnect : databaseViewer: warning in gedit("Tab", cont =
.db$main$nbList$query$tabLine$group, expand = T): partial argument
match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in ggroup(hor = T, cont =
.db$main$nbList$query$saveLine$group): partial argument match of
'hor' to 'horizontal'
DatabaseConnect : databaseViewer: warning in ggroup(hor = T, cont =
.db$main$nbList$query$saveLine$group): partial argument match of
'cont' to 'container'
DatabaseConnect : databaseViewer: warning in gcheckbox("Save in R? ",
cont = .db$main$nbList$query$saveLine$leftGroup, ): partial argument
match of 'cont' to 'container'
DatabaseConnect : databaseViewer: warning in gnotebook(cont =
.db$main$nbList$query$group, expand = T): partial argument match of
'cont' to 'container'
DatabaseConnect : databaseViewer : queryHandler: warning in
gtable(as.data.frame(output), cont = .db$main$nbList$query$notebook,
label = tabname): partial argument match of 'cont' to 'container'
DatabaseConnect : dlgConnect : <anonymous>: no visible global function
definition for ‘dbDriver’
DatabaseConnect : databaseViewer: no visible global function definition
for ‘dbGetQuery’
DatabaseConnect : databaseViewer : lineHandler: no visible global
function definition for ‘dbGetQuery’
DatabaseConnect : databaseViewer : variableHandler: no visible global
function definition for ‘dbGetQuery’
DatabaseConnect : databaseViewer : queryHandler: no visible global
function definition for ‘dbGetQuery’
Undefined global functions or variables:
dbDriver dbGetQuery
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... NONE
- checking PDF version of manual ... OK
- DONE
Status: 4 NOTEs