• using R version 3.6.0 (2019-04-26)
• using platform: x86_64-apple-darwin15.6.0 (64-bit)
• using session charset: UTF-8
• checking for file ‘bbl/DESCRIPTION’ ... OK
• this is package ‘bbl’ version ‘0.3.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘bbl’ can be installed ... [38s/39s] OK
• checking installed package size ... NOTE
    installed size is 6.0Mb
    sub-directories of 1Mb or more:
      extdata 2.3Mb
      libs 3.1Mb
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s/5s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking compiled code ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [12s/12s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [248s/248s] OK
• checking re-building of vignette outputs ... [254s/254s] NOTE
  Error(s) in re-building vignettes:
  --- re-building ‘article.Rnw’ using Sweave
  Setting levels: control = No, case = Yes
  Loading required package: glmnet
  Loading required package: Matrix
  Loaded glmnet 3.0-2
  
  Setting levels: control = No, case = Yes
  Setting levels: control = No, case = Yes
  Loading required package: Biostrings
  Loading required package: BiocGenerics
  Loading required package: parallel
  
  Attaching package: 'BiocGenerics'
  
  The following objects are masked from 'package:parallel':
  
      clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
      clusterExport, clusterMap, parApply, parCapply, parLapply,
      parLapplyLB, parRapply, parSapply, parSapplyLB
  
  The following object is masked from 'package:Matrix':
  
      which
  
  The following objects are masked from 'package:stats':
  
      IQR, mad, sd, var, xtabs
  
  The following objects are masked from 'package:base':
  
      Filter, Find, Map, Position, Reduce, anyDuplicated,
      append, as.data.frame, basename, cbind, colnames, dirname,
      do.call, duplicated, eval, evalq, get, grep, grepl,
      intersect, is.unsorted, lapply, mapply, match, mget,
      order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
      rownames, sapply, setdiff, sort, table, tapply, union,
      unique, unsplit, which, which.max, which.min
  
  Loading required package: S4Vectors
  Warning: package 'S4Vectors' was built under R version 3.6.1
  Loading required package: stats4
  
  Attaching package: 'S4Vectors'
  
  The following object is masked from 'package:Matrix':
  
      expand
  
  The following object is masked from 'package:base':
  
      expand.grid
  
  Loading required package: IRanges
  Warning: package 'IRanges' was built under R version 3.6.1
  Loading required package: XVector
  
  Attaching package: 'Biostrings'
  
  The following object is masked from 'package:base':
  
      strsplit
  
  Error: processing vignette 'article.Rnw' failed with diagnostics:
  Running 'texi2dvi' on 'article.tex' failed.
  LaTeX errors:
  !pdfTeX error: pdflatex (file bbm10): Font bbm10 at 657 not found
   ==> Fatal error occurred, no output PDF file produced!
  --- failed re-building 'article.Rnw'
  
  SUMMARY: processing the following file failed:
    'article.Rnw'
  
  Error: Vignette re-building failed.
  Execution halted
  
• checking PDF version of manual ... OK
• DONE
  Status: 2 NOTEs