* installing *source* package ‘xbioclim’ ...
** this is package ‘xbioclim’ version ‘1.0.3’
** package ‘xbioclim’ successfully unpacked and MD5 sums checked
** using staged installation
checking for gdal-config... /opt/R/x86_64/bin/gdal-config
checking GDAL version >= 2.0.1... yes (3.8.5)
checking whether GDAL links correctly... checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether clang++ -arch x86_64 -std=gnu++17 accepts -g... yes
checking for clang++ -arch x86_64 -std=gnu++17 option to enable C++11 features... none needed
yes
checking for nvcc... not-found
configure: Building without CUDA support (GPU acceleration disabled)
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++17
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -DHAVE_GDAL -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -pthread -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c bioclim.cpp -o bioclim.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -DHAVE_GDAL -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -pthread -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c bioclim_cuda.cpp -o bioclim_cuda.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -DHAVE_GDAL -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -pthread -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c bioclim_model.cpp -o bioclim_model.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -DHAVE_GDAL -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -pthread -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c bioclim_xt.cpp -o bioclim_xt.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -DHAVE_GDAL -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -pthread -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c BioclimEngine.cpp -o BioclimEngine.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -DHAVE_GDAL -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -pthread -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c cuda_utils.cpp -o cuda_utils.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -DHAVE_GDAL -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -pthread -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c era5_monthly.cpp -o era5_monthly.o
bioclim_xt.cpp:170:25: warning: variable 't_sumsq' set but not used [-Wunused-but-set-variable]
double t_sum = 0.0, t_sumsq = 0.0;
^
BioclimEngine.cpp:992:10: warning: unused variable 'use_gpu' [-Wunused-variable]
bool use_gpu = false;
^
bioclim_xt.cpp:72:22: warning: unused function 'quarter_mean_xt' [-Wunused-function]
static inline double quarter_mean_xt(const double* x, int start) {
^
bioclim.cpp:61:22: warning: unused function 'sd_pop_ptr' [-Wunused-function]
static inline double sd_pop_ptr(const double* x) {
^
bioclim.cpp:77:22: warning: unused function 'quarter_mean_ptr' [-Wunused-function]
static inline double quarter_mean_ptr(const double* x, int start) {
^
bioclim.cpp:82:19: warning: unused function 'quarter_argmax_ptr' [-Wunused-function]
static inline int quarter_argmax_ptr(const double* x) {
^
bioclim.cpp:93:19: warning: unused function 'quarter_argmin_ptr' [-Wunused-function]
static inline int quarter_argmin_ptr(const double* x) {
^
bioclim.cpp:465:12: warning: unused function 'count_valid_r' [-Wunused-function]
inline int count_valid_r(const double* x, int n) {
^
bioclim.cpp:733:19: warning: unused function 'n_valid_sel' [-Wunused-function]
static inline int n_valid_sel(const NumericVector& x, const IntegerVector& months) {
^
2 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -DHAVE_GDAL -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -pthread -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c gdal_io.cpp -o gdal_io.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -DHAVE_GDAL -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -pthread -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c gdal_io_rcpp.cpp -o gdal_io_rcpp.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -DHAVE_GDAL -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -pthread -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c gdal_mask.cpp -o gdal_mask.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -DHAVE_GDAL -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -pthread -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c gdal_mask_rcpp.cpp -o gdal_mask_rcpp.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -DHAVE_GDAL -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -pthread -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c rcpp_bioclim_mod.cpp -o rcpp_bioclim_mod.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -DHAVE_GDAL -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -pthread -O2 -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
6 warnings generated.
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o xbioclim.so bioclim.o bioclim_cuda.o bioclim_model.o bioclim_xt.o BioclimEngine.o cuda_utils.o era5_monthly.o gdal_io.o gdal_io_rcpp.o gdal_mask.o gdal_mask_rcpp.o rcpp_bioclim_mod.o RcppExports.o -L/opt/R/x86_64/lib -lgdal -liconv -lodbcinst -lssl -lcrypto -llzma -ldeflate -llz4 -lgeotiff -lzstd -ljpeg -lpng -lnetcdf -lblosc -lwebp -ldf -lmfhdf -lz -lopenjp2 -lpcre2-8 -lpq -lodbc -lfreexl -lexpat -lxml2 -lgeos_c -lgeos -lproj -lm -ldl -lsqlite3 -ltiff -lcurl -lc++ -lpq -lpgcommon -lpgport -lm -ltiff -lwebp -lzstd -llzma -ljpeg -ldeflate -lz -lwebp -lm -D_THREAD_SAFE -pthread -lsharpyuv -lm -D_THREAD_SAFE -pthread -lzstd -pthread -llzma -pthread -lpthread -ljpeg -ldeflate -lz -lnetcdf -lhdf5_hl -lhdf5 -lm -lz -lbz2 -lzstd -lxml2 -lcurl -lsz -lhdf5_hl -lhdf5 -lm -lz -lbz2 -lzstd -lxml2 -lcurl -lsz -pthread -F/Library/Frameworks/R.framework/.. -framework R
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/xbioclim.Rcheck/00_pkg_src/xbioclim/src/bioclim_cuda.o: no symbols
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.5/xbioclim.Rcheck/00LOCK-xbioclim/00new/xbioclim/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (xbioclim)