* installing *source* package ‘vectra’ ... ** this is package ‘vectra’ version ‘0.12.4’ ** package ‘vectra’ successfully unpacked and MD5 sums checked ** using staged installation configure: using pre-vendored src/tdc/ ** libs using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.1.sdk’ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c agg_ops.c -o agg_ops.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c agg_spill.c -o agg_spill.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c array.c -o array.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c batch.c -o batch.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c bed_scan.c -o bed_scan.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c block.c -o block.o array.c:181:13: warning: unused variable 'src_bytes' [-Wunused-variable] int64_t src_bytes = (src_off + n + 7) >> 3; ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c builder.c -o builder.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c byte_reader.c -o byte_reader.o 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c coerce.c -o coerce.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c collect.c -o collect.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c concat.c -o concat.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c csv_scan.c -o csv_scan.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c csv_write.c -o csv_write.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c dropcol.c -o dropcol.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c edt.c -o edt.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c error.c -o error.o edt.c:81:9: warning: unused variable 'parallel' [-Wunused-variable] int parallel = (double)in_h * W > 20000.0; ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c expr.c -o expr.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c expr_datetime.c -o expr_datetime.o 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c expr_geom.c -o expr_geom.o expr_geom.c:346:9: warning: unused variable 'do_par' [-Wunused-variable] int do_par = (n > GEOM_PAR_THRESHOLD); ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c expr_seq.c -o expr_seq.o expr_seq.c:131:9: warning: unused variable 'do_par' [-Wunused-variable] int do_par = (n > SEQ_PAR_THRESHOLD); ^ expr_seq.c:223:9: warning: unused variable 'do_par' [-Wunused-variable] int do_par = (n > SEQ_PAR_THRESHOLD); ^ expr_seq.c:305:9: warning: unused variable 'do_par' [-Wunused-variable] int do_par = (n > SEQ_PAR_THRESHOLD); ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c expr_string.c -o expr_string.o 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c expr_vec.c -o expr_vec.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c fasta_scan.c -o fasta_scan.o expr_vec.c:123:9: warning: unused variable 'do_par' [-Wunused-variable] int do_par = (n > VEC_PAR_THRESHOLD); ^ fasta_scan.c:46:20: warning: unused function 'gbuf_str' [-Wunused-function] static const char *gbuf_str(GBuf *g) { ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c feature_knn.c -o feature_knn.o 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c file_map.c -o file_map.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c filter.c -o filter.o 3 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c focal.c -o focal.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c fuzzy_join.c -o fuzzy_join.o focal.c:121:9: warning: unused variable 'parallel' [-Wunused-variable] int parallel = (double)out_h * W * kh * kw > 50000.0; ^ focal.c:224:9: warning: unused variable 'parallel' [-Wunused-variable] int parallel = (double)out_h * W > 20000.0; ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c group_agg.c -o group_agg.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c group_topn.c -o group_topn.o 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c hash.c -o hash.o 2 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c interval_join.c -o interval_join.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c join.c -o join.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c join_partition.c -o join_partition.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c key_arena.c -o key_arena.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c key_snap.c -o key_snap.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c kmer.c -o kmer.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c libgeos.c -o libgeos.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c limit.c -o limit.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c network.c -o network.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c node_rows.c -o node_rows.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c optimize.c -o optimize.o network.c:246:30: warning: '/*' within block comment [-Wcomment] /* pop the minimum into *outk/*outn; returns 0 when empty */ ^ network.c:381:9: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = 1; ^ network.c:516:9: warning: unused variable 'nthreads' [-Wunused-variable] int nthreads = 1; ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c project.c -o project.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c r_bridge.c -o r_bridge.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c r_bridge_core.c -o r_bridge_core.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c r_bridge_index.c -o r_bridge_index.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c r_bridge_io.c -o r_bridge_io.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c r_bridge_nodes.c -o r_bridge_nodes.o r_bridge_nodes.c:477:14: warning: variable 'method' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] else if (method_int == 2) method = FUZZY_JW; ^~~~~~~~~~~~~~~ r_bridge_nodes.c:489:9: note: uninitialized use occurs here method, max_dist, n_threads, ^~~~~~ r_bridge_nodes.c:477:10: note: remove the 'if' if its condition is always true else if (method_int == 2) method = FUZZY_JW; ^~~~~~~~~~~~~~~~~~~~~ ~ r_bridge_nodes.c:474:5: note: variable 'method' is declared here FuzzyMethod method; ^ r_bridge_nodes.c:550:14: warning: variable 'kind' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized] else if (strcmp(kind_str, "left") == 0) kind = IJOIN_LEFT; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ r_bridge_nodes.c:562:9: note: uninitialized use occurs here kind, closed, n_threads, suffix_y, ^~~~ r_bridge_nodes.c:550:10: note: remove the 'if' if its condition is always true else if (strcmp(kind_str, "left") == 0) kind = IJOIN_LEFT; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~ r_bridge_nodes.c:548:5: note: variable 'kind' is declared here IntervalJoinKind kind; ^ 3 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c r_bridge_raster.c -o r_bridge_raster.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c rasterize.c -o rasterize.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c rec_spill.c -o rec_spill.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c rowid.c -o rowid.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c scalar_ops.c -o scalar_ops.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c scan.c -o scan.o 2 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c schema.c -o schema.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c sort.c -o sort.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c sql_scan.c -o sql_scan.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c sql_write.c -o sql_write.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c sqlite_format.c -o sqlite_format.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tiff_format.c -o tiff_format.o tiff_format.c:2064:19: warning: unused function 'tiff_entry_size' [-Wunused-function] static inline int tiff_entry_size(const TiffWriter *w) { ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tiff_scan.c -o tiff_scan.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tiff_write.c -o tiff_write.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c topn.c -o topn.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vec_raster.c -o vec_raster.o vec_raster.c:2429:25: warning: unused variable 'n_pix' [-Wunused-variable] int64_t n_pix = tw * th; ^ vec_raster.c:315:13: warning: unused function 'vecr_codec_for' [-Wunused-function] static void vecr_codec_for(VecrCodec *c, uint8_t dt) { ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtr1_tdc.c -o vtr1_tdc.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtr_append.c -o vtr_append.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtr_append_cols.c -o vtr_append_cols.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtr_codec_tdc.c -o vtr_codec_tdc.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtr_delete.c -o vtr_delete.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtr_diff.c -o vtr_diff.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtr_fileops.c -o vtr_fileops.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtr_geos.c -o vtr_geos.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtr_overlay.c -o vtr_overlay.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtr_spatial.c -o vtr_spatial.o vtr_overlay.c:399:9: warning: variable 'nthreads' set but not used [-Wunused-but-set-variable] int nthreads = (Rf_length(nthreads_sexp) > 0) ? INTEGER(nthreads_sexp)[0] : 0; ^ vtr_spatial.c:352:9: warning: unused variable 'nt' [-Wunused-variable] int nt = resolve_threads(nthreads_sexp, m); ^ vtr_spatial.c:446:9: warning: unused variable 'nt' [-Wunused-variable] int nt = resolve_threads(nthreads_sexp, m); ^ vtr_spatial.c:543:9: warning: unused variable 'nt' [-Wunused-variable] int nt = resolve_threads(nthreads_sexp, m); ^ vtr_spatial.c:665:9: warning: unused variable 'nt' [-Wunused-variable] int nt = resolve_threads(nthreads_sexp, m); ^ vtr_spatial.c:812:9: warning: unused variable 'nt' [-Wunused-variable] int nt = resolve_threads(nthreads_sexp, m); ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtr_write.c -o vtr_write.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c vtri.c -o vtri.o 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c warp.c -o warp.o 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c window.c -o window.o 5 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/decode.c -o tdc/src/api/decode.o warp.c:75:9: warning: unused variable 'parallel' [-Wunused-variable] int parallel = (double)n > 20000.0; ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/decode_dict.c -o tdc/src/api/decode_dict.o 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/decode_ex.c -o tdc/src/api/decode_ex.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/decode_impl.c -o tdc/src/api/decode_impl.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/decode_into.c -o tdc/src/api/decode_into.o tdc/src/api/decode_impl.c:344:16: warning: unused variable 'raw_mib' [-Wunused-variable] double raw_mib = (double)raw / (1024.0 * 1024.0); ^ tdc/src/api/decode_impl.c:345:21: warning: unused variable 'tag' [-Wunused-variable] const char *tag = timer_tag ? timer_tag : "dec "; ^ tdc/src/api/decode_impl.c:210:12: warning: variable 't_entropy' set but not used [-Wunused-but-set-variable] double t_entropy = 0.0, t_xform = 0.0, t_model = 0.0; ^ tdc/src/api/decode_impl.c:210:29: warning: variable 't_xform' set but not used [-Wunused-but-set-variable] double t_entropy = 0.0, t_xform = 0.0, t_model = 0.0; ^ tdc/src/api/decode_impl.c:210:44: warning: variable 't_model' set but not used [-Wunused-but-set-variable] double t_entropy = 0.0, t_xform = 0.0, t_model = 0.0; ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/decode_varlen.c -o tdc/src/api/decode_varlen.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/encode.c -o tdc/src/api/encode.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/pushpull_decode.c -o tdc/src/api/pushpull_decode.o tdc/src/api/encode.c:289:17: warning: unused variable 'raw_mib' [-Wunused-variable] double raw_mib = (double)raw / (1024.0 * 1024.0); ^ tdc/src/api/encode.c:126:12: warning: variable 't_model' set but not used [-Wunused-but-set-variable] double t_model = 0.0, t_xform = 0.0, t_entropy = 0.0; ^ tdc/src/api/encode.c:126:27: warning: variable 't_xform' set but not used [-Wunused-but-set-variable] double t_model = 0.0, t_xform = 0.0, t_entropy = 0.0; ^ tdc/src/api/encode.c:126:42: warning: variable 't_entropy' set but not used [-Wunused-but-set-variable] double t_model = 0.0, t_xform = 0.0, t_entropy = 0.0; ^ 5 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/pushpull_encode.c -o tdc/src/api/pushpull_encode.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/stream_decode.c -o tdc/src/api/stream_decode.o tdc/src/api/pushpull_encode.c:66:14: warning: unused function 'pp_alloc' [-Wunused-function] static void *pp_alloc(tdc_pushpull_encoder *e, void *p, size_t sz) { ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/api/stream_encode.c -o tdc/src/api/stream_encode.o 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/core/arena.c -o tdc/src/core/arena.o 4 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/core/block.c -o tdc/src/core/block.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/core/decode_profile.c -o tdc/src/core/decode_profile.o tdc/src/core/decode_profile.c:53:16: warning: unused variable 'pct' [-Wunused-variable] double pct = 100.0 * (double)tdc_dp_cycles[i] / (double)total; ^ tdc/src/core/decode_profile.c:54:16: warning: unused variable 'cps' [-Wunused-variable] double cps = tdc_dp_n_seqs_total ^ tdc/src/core/decode_profile.c:72:20: warning: unused variable 'pct' [-Wunused-variable] double pct = 100.0 * (double)tdc_dp_off_hist[i] / (double)hsum; ^ tdc/src/core/decode_profile.c:65:28: warning: unused variable 'labels' [-Wunused-variable] static const char *labels[8] = { ^ tdc/src/core/decode_profile.c:44:24: warning: unused variable 'names' [-Wunused-variable] static const char *names[TDC_DP_NSEC] = { ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/core/error.c -o tdc/src/core/error.o 5 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/core/registry.c -o tdc/src/core/registry.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/core/stream.c -o tdc/src/core/stream.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/core/version.c -o tdc/src/core/version.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/deflate.c -o tdc/src/entropy/deflate.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/fse.c -o tdc/src/entropy/fse.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/huffman.c -o tdc/src/entropy/huffman.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/huffman4.c -o tdc/src/entropy/huffman4.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/lane.c -o tdc/src/entropy/lane.o 2 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/lz.c -o tdc/src/entropy/lz.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/lz_opt.c -o tdc/src/entropy/lz_opt.o tdc/src/entropy/lz_opt.c:915:16: warning: unused variable 't_end' [-Wunused-variable] double t_end = tdc_now_secs(); ^ tdc/src/entropy/lz_opt.c:917:18: warning: unused variable 'cnt_work' [-Wunused-variable] uint64_t cnt_work = cnt_total - cnt_skip - cnt_inf; ^ tdc/src/entropy/lz_opt.c:670:18: warning: unused variable 't_start' [-Wunused-variable] const double t_start = timing ? tdc_now_secs() : 0.0; ^ tdc/src/entropy/lz_opt.c:700:18: warning: unused variable 't_init' [-Wunused-variable] const double t_init = timing ? tdc_now_secs() : 0.0; ^ tdc/src/entropy/lz_opt.c:703:41: warning: variable 'cnt_rep_skip' set but not used [-Wunused-but-set-variable] uint64_t cnt_skip = 0, cnt_inf = 0, cnt_rep_skip = 0; ^ tdc/src/entropy/lz_opt.c:704:14: warning: variable 'cnt_chain' set but not used [-Wunused-but-set-variable] uint64_t cnt_chain = 0, cnt_chain_skip = 0; ^ tdc/src/entropy/lz_opt.c:704:29: warning: variable 'cnt_chain_skip' set but not used [-Wunused-but-set-variable] uint64_t cnt_chain = 0, cnt_chain_skip = 0; ^ tdc/src/entropy/lz_opt.c:705:14: warning: variable 'rep_bytes' set but not used [-Wunused-but-set-variable] uint64_t rep_bytes = 0, rep_calls = 0; ^ tdc/src/entropy/lz_opt.c:705:29: warning: variable 'rep_calls' set but not used [-Wunused-but-set-variable] uint64_t rep_bytes = 0, rep_calls = 0; ^ tdc/src/entropy/lz_opt.c:864:18: warning: unused variable 't_loop' [-Wunused-variable] const double t_loop = timing ? tdc_now_secs() : 0.0; ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/lz_streams.c -o tdc/src/entropy/lz_streams.o tdc/src/entropy/lz_streams.c:1233:22: warning: variable 'p_extra' set but not used [-Wunused-but-set-variable] uint32_t p_extra = 0; ^ tdc/src/entropy/lz_streams.c:1346:18: warning: variable 'll_extra_bits' set but not used [-Wunused-but-set-variable] uint32_t ll_extra_bits = 0, ml_extra_bits = 0, off_extra_bits = 0; ^ tdc/src/entropy/lz_streams.c:1346:37: warning: variable 'ml_extra_bits' set but not used [-Wunused-but-set-variable] uint32_t ll_extra_bits = 0, ml_extra_bits = 0, off_extra_bits = 0; ^ tdc/src/entropy/lz_streams.c:1347:18: warning: variable 'n_repcodes' set but not used [-Wunused-but-set-variable] uint32_t n_repcodes = 0; ^ tdc/src/entropy/lz_streams.c:1565:16: warning: unused variable 't_other' [-Wunused-variable] double t_other = t_entropy - t_lit_ctx; ^ tdc/src/entropy/lz_streams.c:1566:16: warning: unused variable 't_total' [-Wunused-variable] double t_total = t_initial + t_priced + t_build + t_entropy; ^ tdc/src/entropy/lz_streams.c:1582:18: warning: unused variable 'total_enc' [-Wunused-variable] uint32_t total_enc = (uint32_t)LZS_HEADER_SIZE_V2 ^ tdc/src/entropy/lz_streams.c:1584:21: warning: unused variable 'lit_mode' [-Wunused-variable] const char *lit_mode = use_lit_ctx ? "CTX" : id_name[id_lit]; ^ tdc/src/entropy/lz_streams.c:365:24: warning: unused function 'lzs_bits_read' [-Wunused-function] static inline uint32_t lzs_bits_read(const uint8_t *buf, uint32_t *bit_pos, ^ tdc/src/entropy/lz_streams.c:533:13: warning: unused function 'lzs_shuffle_u32' [-Wunused-function] static void lzs_shuffle_u32(const uint32_t *src, uint32_t n, uint8_t *dst) { ^ tdc/src/entropy/lz_streams.c:1736:24: warning: unused function 'lzs_br_read_fast' [-Wunused-function] static inline uint32_t lzs_br_read_fast(lzs_br *br, uint32_t nb) { ^ tdc/src/entropy/lz_streams.c:2061:19: warning: unused function 'lzs_reconstruct_symbols' [-Wunused-function] static tdc_status lzs_reconstruct_symbols(const uint8_t *ll_dec, ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/mf_btree.c -o tdc/src/entropy/mf_btree.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/mf_hashchain.c -o tdc/src/entropy/mf_hashchain.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/entropy/none.c -o tdc/src/entropy/none.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/format/block_record.c -o tdc/src/format/block_record.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/format/header.c -o tdc/src/format/header.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/format/metadata.c -o tdc/src/format/metadata.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/format/rowgroup.c -o tdc/src/format/rowgroup.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/format/schema.c -o tdc/src/format/schema.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/format/stats.c -o tdc/src/format/stats.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/layout/tiling.c -o tdc/src/layout/tiling.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/layout/traverse.c -o tdc/src/layout/traverse.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/delta1d.c -o tdc/src/model/delta1d.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/delta2_1d.c -o tdc/src/model/delta2_1d.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/dict.c -o tdc/src/model/dict.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/dict_numeric.c -o tdc/src/model/dict_numeric.o 10 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/fpc1d.c -o tdc/src/model/fpc1d.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/plane2d.c -o tdc/src/model/plane2d.o tdc/src/model/plane2d.c:764:18: warning: variable 'n_nonzero' set but not used [-Wunused-but-set-variable] uint64_t n_nonzero = 0; ^ tdc/src/model/plane2d.c:765:18: warning: variable 'energy' set but not used [-Wunused-but-set-variable] uint64_t energy = 0; ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/pred2d.c -o tdc/src/model/pred2d.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/pred3d.c -o tdc/src/model/pred3d.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/pred3d_float.c -o tdc/src/model/pred3d_float.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/quantize_pred2d.c -o tdc/src/model/quantize_pred2d.o 12 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/raw.c -o tdc/src/model/raw.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/sparse_zero_1d.c -o tdc/src/model/sparse_zero_1d.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/model/stack2d.c -o tdc/src/model/stack2d.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/symbols/residuals.c -o tdc/src/symbols/residuals.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/symbols/runs.c -o tdc/src/symbols/runs.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/transform/bitshuffle.c -o tdc/src/transform/bitshuffle.o tdc/src/transform/bitshuffle.c:190:13: warning: unused function 'bitshuffle_scatter' [-Wunused-function] static void bitshuffle_scatter(uint8_t *dst, const uint8_t *src, ^ tdc/src/transform/bitshuffle.c:219:13: warning: unused function 'bitshuffle_gather' [-Wunused-function] static void bitshuffle_gather(uint8_t *dst, const uint8_t *src, ^ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/transform/complement.c -o tdc/src/transform/complement.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/transform/quantize.c -o tdc/src/transform/quantize.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/transform/shuffle.c -o tdc/src/transform/shuffle.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c tdc/src/transform/zigzag.c -o tdc/src/transform/zigzag.o 2 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/libgeos/include' -I/opt/R/x86_64/include -I./tdc/include -fPIC -falign-functions=64 -Wall -g -O2 -c miniz/miniz.c -o miniz/miniz.o 2 warnings generated. clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o vectra.so agg_ops.o agg_spill.o array.o batch.o bed_scan.o block.o builder.o byte_reader.o coerce.o collect.o concat.o csv_scan.o csv_write.o dropcol.o edt.o error.o expr.o expr_datetime.o expr_geom.o expr_seq.o expr_string.o expr_vec.o fasta_scan.o feature_knn.o file_map.o filter.o focal.o fuzzy_join.o group_agg.o group_topn.o hash.o init.o interval_join.o join.o join_partition.o key_arena.o key_snap.o kmer.o libgeos.o limit.o network.o node_rows.o optimize.o project.o r_bridge.o r_bridge_core.o r_bridge_index.o r_bridge_io.o r_bridge_nodes.o r_bridge_raster.o rasterize.o rec_spill.o rowid.o scalar_ops.o scan.o schema.o sort.o sql_scan.o sql_write.o sqlite_format.o tiff_format.o tiff_scan.o tiff_write.o topn.o vec_raster.o vtr1_tdc.o vtr_append.o vtr_append_cols.o vtr_codec_tdc.o vtr_delete.o vtr_diff.o vtr_fileops.o vtr_geos.o vtr_overlay.o vtr_spatial.o vtr_write.o vtri.o warp.o window.o tdc/src/api/decode.o tdc/src/api/decode_dict.o tdc/src/api/decode_ex.o tdc/src/api/decode_impl.o tdc/src/api/decode_into.o tdc/src/api/decode_varlen.o tdc/src/api/encode.o tdc/src/api/pushpull_decode.o tdc/src/api/pushpull_encode.o tdc/src/api/stream_decode.o tdc/src/api/stream_encode.o tdc/src/core/arena.o tdc/src/core/block.o tdc/src/core/decode_profile.o tdc/src/core/error.o tdc/src/core/registry.o tdc/src/core/stream.o tdc/src/core/version.o tdc/src/entropy/deflate.o tdc/src/entropy/fse.o tdc/src/entropy/huffman.o tdc/src/entropy/huffman4.o tdc/src/entropy/lane.o tdc/src/entropy/lz.o tdc/src/entropy/lz_opt.o tdc/src/entropy/lz_streams.o tdc/src/entropy/mf_btree.o tdc/src/entropy/mf_hashchain.o tdc/src/entropy/none.o tdc/src/format/block_record.o tdc/src/format/header.o tdc/src/format/metadata.o tdc/src/format/rowgroup.o tdc/src/format/schema.o tdc/src/format/stats.o tdc/src/layout/tiling.o tdc/src/layout/traverse.o tdc/src/model/delta1d.o tdc/src/model/delta2_1d.o tdc/src/model/dict.o tdc/src/model/dict_numeric.o tdc/src/model/fpc1d.o tdc/src/model/plane2d.o tdc/src/model/pred2d.o tdc/src/model/pred3d.o tdc/src/model/pred3d_float.o tdc/src/model/quantize_pred2d.o tdc/src/model/raw.o tdc/src/model/sparse_zero_1d.o tdc/src/model/stack2d.o tdc/src/symbols/residuals.o tdc/src/symbols/runs.o tdc/src/transform/bitshuffle.o tdc/src/transform/complement.o tdc/src/transform/quantize.o tdc/src/transform/shuffle.o tdc/src/transform/zigzag.o miniz/miniz.o -F/Library/Frameworks/R.framework/.. -framework R /Volumes/Builds/packages/big-sur-x86_64/results/4.5/vectra.Rcheck/00_pkg_src/vectra/src/tdc/src/core/arena.o: no symbols /Volumes/Builds/packages/big-sur-x86_64/results/4.5/vectra.Rcheck/00_pkg_src/vectra/src/tdc/src/core/stream.o: no symbols /Volumes/Builds/packages/big-sur-x86_64/results/4.5/vectra.Rcheck/00_pkg_src/vectra/src/tdc/src/entropy/deflate.o: no symbols /Volumes/Builds/packages/big-sur-x86_64/results/4.5/vectra.Rcheck/00_pkg_src/vectra/src/tdc/src/layout/traverse.o: no symbols /Volumes/Builds/packages/big-sur-x86_64/results/4.5/vectra.Rcheck/00_pkg_src/vectra/src/tdc/src/symbols/residuals.o: no symbols installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.5/vectra.Rcheck/00LOCK-vectra/00new/vectra/libs ** generating debug symbols (dSYM) ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vectra)