Install log for 'vapour'

* installing *source* package ‘vapour’ ...
** package ‘vapour’ successfully unpacked and MD5 sums checked
** using staged installation
configure: CC: clang -arch x86_64
configure: CXX: clang++ -arch x86_64 -std=gnu++17
checking for gdal-config... /opt/R/x86_64/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 3.5.3
checking GDAL version >= 2.0.1... yes
checking for gcc... clang -arch x86_64
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang -arch x86_64 accepts -g... yes
checking for clang -arch x86_64 option to accept ISO C89... none needed
checking how to run the C preprocessor... clang -arch x86_64 -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... rm: conftest.dSYM: is a directory
rm: conftest.dSYM: is a directory
yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking gdal.h usability... yes
checking gdal.h presence... yes
checking for gdal.h... yes
checking GDAL: linking with --libs only... no
checking GDAL: linking with --libs and --dep-libs... yes
checking GDAL: checking whether PROJ is available for linking:... yes
checking GDAL: checking whether PROJ is available for running:... yes
configure: GDAL: 3.5.3
configure: pkg-config proj exists, will use it
configure: using proj.h.
configure: PROJ: 9.1.0
configure: LIBS: -L/opt/R/x86_64/lib -lproj -lc++ -lm -ldl -lsqlite3 -lz -ltiff -lwebp -llzma -ljpeg -lz -lwebp -lm -D_THREAD_SAFE -pthread -lsharpyuv -lm -D_THREAD_SAFE -pthread -llzma -pthread -lpthread -ljpeg -lz -lcurl    -L/opt/R/x86_64/lib -lgdal
checking PROJ: checking whether PROJ and sqlite3 are available for linking:... yes
configure: Package CPP flags:  -I/opt/R/x86_64/include -I/opt/R/x86_64/include/webp -I/opt/R/x86_64/include -DHAVE_PROJ_H -I/opt/R/x86_64/include
configure: Package LIBS:  -L/opt/R/x86_64/lib -lgdal -lcrypto -L/opt/R/x86_64/lib -lfreexl -liconv -L/opt/R/x86_64/lib -lgeos_c -lgeos -lm -lstdc++ -lwebp -lodbc -lodbcinst -L/opt/R/x86_64/lib -lexpat -L/opt/R/x86_64/lib -lopenjp2 -lm -L/opt/R/x86_64/lib -L/opt/R/x86_64/lib -lnetcdf -lhdf5_hl -lhdf5 -lm -lz -lcurl -L/opt/R/x86_64/lib -lsz -lhdf5 -lmfhdf -ldf -lpng -L/opt/R/x86_64/lib -lpq -lpgcommon -lpgport -lm -lzstd -llzma -lproj -L/opt/R/x86_64/lib -lproj -lc++ -lm -ldl -lsqlite3 -lz -ltiff -lwebp -llzma -ljpeg -lz -lwebp -lm -D_THREAD_SAFE -pthread -lsharpyuv -lm -D_THREAD_SAFE -pthread -llzma -pthread -lpthread -ljpeg -lz -lcurl -lsz -L/opt/R/x86_64/lib -lsqlite3 -ljpeg -lz -lpthread -ldl -lpcre2-8 -lcurl -liconv -lxml2 -lpthread -lz -lm -L/opt/R/x86_64/lib -lproj -lc++ -lm -ldl -lsqlite3 -lz -ltiff -lwebp -llzma -ljpeg -lz -lwebp -lm -D_THREAD_SAFE -pthread -lsharpyuv -lm -D_THREAD_SAFE -pthread -llzma -pthread -lpthread -ljpeg -lz -lcurl 
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include/webp -I/opt/R/x86_64/include -DHAVE_PROJ_H -I/opt/R/x86_64/include -I../inst/include/    -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c 000-stream.cpp -o 000-stream.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include/webp -I/opt/R/x86_64/include -DHAVE_PROJ_H -I/opt/R/x86_64/include -I../inst/include/    -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c 000-warpgeneral.cpp -o 000-warpgeneral.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include/webp -I/opt/R/x86_64/include -DHAVE_PROJ_H -I/opt/R/x86_64/include -I../inst/include/    -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c 00_config.cpp -o 00_config.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include/webp -I/opt/R/x86_64/include -DHAVE_PROJ_H -I/opt/R/x86_64/include -I../inst/include/    -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c 00_gdal.cpp -o 00_gdal.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include/webp -I/opt/R/x86_64/include -DHAVE_PROJ_H -I/opt/R/x86_64/include -I../inst/include/    -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c 00_geometry.cpp -o 00_geometry.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include/webp -I/opt/R/x86_64/include -DHAVE_PROJ_H -I/opt/R/x86_64/include -I../inst/include/    -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c 00_raster.cpp -o 00_raster.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include/webp -I/opt/R/x86_64/include -DHAVE_PROJ_H -I/opt/R/x86_64/include -I../inst/include/    -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c 00_raster_block_io.cpp -o 00_raster_block_io.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include/webp -I/opt/R/x86_64/include -DHAVE_PROJ_H -I/opt/R/x86_64/include -I../inst/include/    -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c 00_utils.cpp -o 00_utils.o
In file included from 000-warpgeneral.cpp:2:
../inst/include/gdallibrary/gdallibrary.h:537:7: warning: variable 'warncount' set but not used [-Wunused-but-set-variable]
  int warncount = 0;
      ^
In file included from 00_raster.cpp:2:
../inst/include/gdallibrary/gdallibrary.h:537:7: warning: variable 'warncount' set but not used [-Wunused-but-set-variable]
  int warncount = 0;
      ^
In file included from 00_gdal.cpp:2:
../inst/include/gdallibrary/gdallibrary.h:537:7: warning: variable 'warncount' set but not used [-Wunused-but-set-variable]
  int warncount = 0;
      ^
In file included from 00_raster_block_io.cpp:2:
In file included from ../inst/include/gdalreadwrite/gdalreadwrite.h:8:
../inst/include/gdallibrary/gdallibrary.h:537:7: warning: variable 'warncount' set but not used [-Wunused-but-set-variable]
  int warncount = 0;
      ^
In file included from 00_config.cpp:2:
../inst/include/gdallibrary/gdallibrary.h:537:7: warning: variable 'warncount' set but not used [-Wunused-but-set-variable]
  int warncount = 0;
      ^
In file included from 00_geometry.cpp:2:
In file included from ../inst/include/gdalgeometry/gdalgeometry.h:11:
../inst/include/gdallibrary/gdallibrary.h:537:7: warning: variable 'warncount' set but not used [-Wunused-but-set-variable]
  int warncount = 0;
      ^
00_raster_block_io.cpp:69:10: warning: variable 'err' set but not used [-Wunused-but-set-variable]
  CPLErr err;
         ^
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include/webp -I/opt/R/x86_64/include -DHAVE_PROJ_H -I/opt/R/x86_64/include -I../inst/include/    -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c 00_vrt.cpp -o 00_vrt.o
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include/webp -I/opt/R/x86_64/include -DHAVE_PROJ_H -I/opt/R/x86_64/include -I../inst/include/    -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -I/opt/R/x86_64/include/webp -I/opt/R/x86_64/include -DHAVE_PROJ_H -I/opt/R/x86_64/include -I../inst/include/    -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c warp_file.cpp -o warp_file.o
1 warning generated.
1 warning generated.
2 warnings generated.
1 warning generated.
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o vapour.so 000-stream.o 000-warpgeneral.o 00_config.o 00_gdal.o 00_geometry.o 00_raster.o 00_raster_block_io.o 00_utils.o 00_vrt.o RcppExports.o warp_file.o -L/opt/R/x86_64/lib -lgdal -lcrypto -L/opt/R/x86_64/lib -lfreexl -liconv -L/opt/R/x86_64/lib -lgeos_c -lgeos -lm -lstdc++ -lwebp -lodbc -lodbcinst -L/opt/R/x86_64/lib -lexpat -L/opt/R/x86_64/lib -lopenjp2 -lm -L/opt/R/x86_64/lib -L/opt/R/x86_64/lib -lnetcdf -lhdf5_hl -lhdf5 -lm -lz -lcurl -L/opt/R/x86_64/lib -lsz -lhdf5 -lmfhdf -ldf -lpng -L/opt/R/x86_64/lib -lpq -lpgcommon -lpgport -lm -lzstd -llzma -lproj -L/opt/R/x86_64/lib -lproj -lc++ -lm -ldl -lsqlite3 -lz -ltiff -lwebp -llzma -ljpeg -lz -lwebp -lm -D_THREAD_SAFE -pthread -lsharpyuv -lm -D_THREAD_SAFE -pthread -llzma -pthread -lpthread -ljpeg -lz -lcurl -lsz -L/opt/R/x86_64/lib -lsqlite3 -ljpeg -lz -lpthread -ldl -lpcre2-8 -lcurl -liconv -lxml2 -lpthread -lz -lm -L/opt/R/x86_64/lib -lproj -lc++ -lm -ldl -lsqlite3 -lz -ltiff -lwebp -llzma -ljpeg -lz -lwebp -lm -D_THREAD_SAFE -pthread -lsharpyuv -lm -D_THREAD_SAFE -pthread -llzma -pthread -lpthread -ljpeg -lz -lcurl -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/vapour.Rcheck/00LOCK-vapour/00new/vapour/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (vapour)