* installing *source* package ‘rxode2lincmt’ ...
** this is package ‘rxode2lincmt’ version ‘0.1.0’
** package ‘rxode2lincmt’ successfully unpacked and MD5 sums checked
** using staged installation
--------[begin src/Makevars]--------
# -*- mode: makefile-gmake -*-
BH=/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include
RCPP=/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include
EG=/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include
SH=-I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src'
CXX_STD = CXX17
################################################################################
## Package library flags.
PKG_LIBS = $(SHLIB_OPENMP_CXXFLAGS)
# Same optimization and Stan/Eigen defines as rxode2 had, so the moved
# kernels produce bitwise identical results.
PKG_CFLAGS = -O3 -fno-math-errno -mtune=native
PKG_CXXFLAGS = -O3 -fno-math-errno -mtune=native $(SHLIB_OPENMP_CXXFLAGS) -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -include lcStanCompat.h -I"$(BH)" -I"$(EG)" $(SH) -I"$(RCPP)" -DEIGEN_DONT_PARALLELIZE
--------[end src/Makevars]--------
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++17
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I/opt/R/x86_64/include -O3 -fno-math-errno -mtune=native -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -include lcStanCompat.h -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include" -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src' -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include" -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I/opt/R/x86_64/include -O3 -fno-math-errno -mtune=native -fPIC -falign-functions=64 -Wall -g -O2 -c host.c -o host.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I/opt/R/x86_64/include -O3 -fno-math-errno -mtune=native -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I/opt/R/x86_64/include -O3 -fno-math-errno -mtune=native -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -include lcStanCompat.h -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include" -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src' -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include" -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c linCmt.cpp -o linCmt.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I/opt/R/x86_64/include -O3 -fno-math-errno -mtune=native -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -include lcStanCompat.h -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include" -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src' -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include" -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c macros2micros.cpp -o macros2micros.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I/opt/R/x86_64/include -O3 -fno-math-errno -mtune=native -fPIC -falign-functions=64 -Wall -g -O2 -c ptr.c -o ptr.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I/opt/R/x86_64/include -O3 -fno-math-errno -mtune=native -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -include lcStanCompat.h -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include" -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src' -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include" -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c rxDerived.cpp -o rxDerived.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I/opt/R/x86_64/include -O3 -fno-math-errno -mtune=native -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -D_REENTRANT -include lcStanCompat.h -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include" -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -DTBB_INTERFACE_NEW -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/src' -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include" -DEIGEN_DONT_PARALLELIZE -fPIC -falign-functions=64 -Wall -g -O2 -c solComp.cpp -o solComp.o
In file included from linCmt.cpp:11:
In file included from ./linCmt.h:4:
In file included from ./macros2micros.h:8:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from linCmt.cpp:11:
In file included from ./linCmt.h:4:
In file included from ./macros2micros.h:8:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from macros2micros.cpp:7:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from rxDerived.cpp:7:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from macros2micros.cpp:7:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from solComp.cpp:7:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from solComp.cpp:7:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from rxDerived.cpp:7:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/fun/Eigen.hpp:33:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
Index count = 0;
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
Index nsuper_et = 0; // Number of relaxed snodes in the original etree
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
Index replacements = 0;
^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0;
^
5 warnings generated.
In file included from linCmt.cpp:11:
In file included from ./linCmt.h:4:
In file included from ./macros2micros.h:8:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob.hpp:7:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
^
In file included from macros2micros.cpp:7:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob.hpp:7:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
^
In file included from solComp.cpp:7:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob.hpp:7:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
^
In file included from rxDerived.cpp:7:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:16:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob.hpp:7:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:52:20: warning: unused variable 'p_val_flip' [-Wunused-variable]
const double p_val_flip = p_val < 0.5 ? p_val : 1.0 - p_val;
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev/prob/student_t_qf.hpp:42:18: warning: unused variable 'sqrt_inv_ibeta_m1' [-Wunused-variable]
const double sqrt_inv_ibeta_m1 = sqrt(inv(ibeta_arg) - 1.0);
^
In file included from linCmt.cpp:11:
In file included from ./linCmt.h:4:
In file included from ./macros2micros.h:8:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob.hpp:290:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
static constexpr const char* function = "student_t_qf";
^
In file included from macros2micros.cpp:7:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob.hpp:290:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
static constexpr const char* function = "student_t_qf";
^
In file included from solComp.cpp:7:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob.hpp:290:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
static constexpr const char* function = "student_t_qf";
^
In file included from rxDerived.cpp:7:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math.hpp:19:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/rev.hpp:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim.hpp:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob.hpp:290:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/StanHeaders/include/stan/math/prim/prob/student_t_qf.hpp:74:32: warning: unused variable 'function' [-Wunused-variable]
static constexpr const char* function = "student_t_qf";
^
In file included from linCmt.cpp:11:
In file included from ./linCmt.h:4:
In file included from ./macros2micros.h:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
Index replacements = 0;
^
In file included from macros2micros.cpp:8:
In file included from ./macros2micros.h:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
Index replacements = 0;
^
In file included from linCmt.cpp:11:
In file included from ./linCmt.h:4:
In file included from ./macros2micros.h:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0;
^
In file included from rxDerived.cpp:8:
In file included from ./macros2micros.h:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
Index replacements = 0;
^
In file included from macros2micros.cpp:8:
In file included from ./macros2micros.h:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0;
^
In file included from rxDerived.cpp:8:
In file included from ./macros2micros.h:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0;
^
In file included from solComp.cpp:8:
In file included from ./solComp.h:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
Index replacements = 0;
^
In file included from solComp.cpp:8:
In file included from ./solComp.h:12:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
int count = 0;
^
8 warnings generated.
8 warnings generated.
8 warnings generated.
8 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o rxode2lincmt.so RcppExports.o host.o init.o linCmt.o macros2micros.o ptr.o rxDerived.o solComp.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.5/rxode2lincmt.Rcheck/00LOCK-rxode2lincmt/00new/rxode2lincmt/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rxode2lincmt)