* installing *source* package ‘rxode2’ ...
** package ‘rxode2’ successfully unpacked and MD5 sums checked
** using staged installation

R version 4.2.0 (2022-04-22) -- "Vigorous Calisthenics"
Copyright (C) 2022 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

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> ## This is only for rxode2
> for (f in c("inst/include/rxode2_RcppExports.h", "src/RcppExports.cpp")) {
+   l <- readLines(f)
+   w <- which(regexpr("^[#]include <RcppArmadillo.h>", l) != -1)
+   if (length(w) > 0) {
+     l <- l[-w]
+   }
+   w <- which(regexpr("^[#]define R_STRICT_HEADERS", l) != -1)
+   if (length(w) > 0) {
+     l <- l[-w]
+   }
+   l <- c("#define R_STRICT_HEADERS",
+          "#include <RcppArmadillo.h>",
+          l)
+   file.out <- file(f, "wb")
+   writeLines(l, file.out)
+   close(file.out)
+ }
> 
> l <- readLines("R/RcppExports.R")
> w <- which(regexpr("# Register entry points", l, fixed=TRUE) != -1)
> if (length(w) >= 1) {
+   w <- w[1]
+   l <- l[seq(1, w-1)]
+   RcppExports.R <- file("R/RcppExports.R", "wb")
+   writeLines(l, RcppExports.R)
+   close(RcppExports.R)
+ }
> 
> .in <- suppressWarnings(readLines("src/Makevars.in"))
> .in <- gsub("@ARMA@", file.path(find.package("RcppArmadillo"),"include"), .in)
> .in <- gsub("@BH@", file.path(find.package("BH"),"include"), .in)
> .in <- gsub("@RCPP@", file.path(find.package("Rcpp"),"include"), .in)
> 
> 
> 
> if (.Platform$OS.type == "windows" && !file.exists("src/Makevars.win")) {
+   .in <- gsub("@CXX14STD@", "-std=c++1y", .in)
+   file.out <- file("src/Makevars.win", "wb")
+   writeLines(gsub("@ISYSTEM@", "I", .in),
+              file.out)
+   close(file.out)
+ } else {
+   .in <- gsub("@CXX14STD@", "-std=gnu++14", .in)
+   file.out <- file("src/Makevars", "wb")
+   writeLines(gsub("@ISYSTEM@", "isystem", .in),
+              file.out)
+   close(file.out)
+ }
> 
> if (file.exists("man/reexports.Rd")) {
+   l <- readLines("man/reexports.Rd")
+   if (!any(regexpr("[\\]value", l) != -1)) {
+     l <- c(l, "\\value{ Inherited from parent routine }")
+     file.out <- file("man/reexports.Rd", "wb")
+     writeLines(l, file.out)
+     close(file.out)
+   }
+ }
> 
> 
> unlink("R/rxode2_md5.R")
> 
> cpp <- list.files("src", pattern = ".(c|h|cpp|f)$")
> include <- list.files("inst/include")
> #Rfiles <- list.files("R/", pattern = ".R")
> 
> cmd <- file.path(R.home("bin"), "R")
> args <- c("CMD", "config")
> 
> md5 <- digest::digest(c(lapply(c(paste0("src/", cpp),
+                                  paste0("inst/include/", include)#,
+                                  #paste0("R/", Rfiles)
+                                  ), digest::digest, file = TRUE),
+                         rxode2parse::rxode2parseMd5(),
+                         rxode2random::rxode2randomMd5(),
+                         ## vapply(c("BLAS_LIBS", "CC",  "CFLAGS", "CPICFLAGS",
+                         ##          "CXX", "CXXFLAGS", "CXXPICFLAGS",
+                         ##          "CXX11", "CXX11STD", "CXX11FLAGS", "CXX11PICFLAGS",
+                         ##          "CXX14", "CXX14STD", "CXX14FLAGS", "CXX14PICFLAGS",
+                         ##          "CXX17", "CXX17STD", "CXX17FLAGS", "CXX17PICFLAGS",
+                         ##          "CXX20", "CXX20STD", "CXX20FLAGS", "CXX20PICFLAGS",
+                         ##          "FC", "FFLAGS", "FCFLAGS",  "FPICFLAGS"),
+                         ##        function(cfg) {
+                         ##          rawToChar(sys::exec_internal(cmd, c(args, cfg))$stdout)
+                         ##        }, character(1)
+                         ##       ),
+                         ""
+                         ))
> unlink("R/rxode2_md5.R")
> md5file <- file("R/rxode2_md5.R", "wb")
> writeLines(sprintf("rxode2.md5 <- \"%s\"\n", md5), md5file)
> close(md5file)
> 
> l <- readLines(file.path(system.file(package="rxode2parse"), "include", "sbuf.c"))
> 
> sbuf.c <- file("src/sbuf.c", "wb")
> .w <- which(regexpr(" *extern +SEXP +_goodFuns; *", l) != -1)
> l <- l[-seq(.w, length(l))]
> writeLines(l, sbuf.c)
> close(sbuf.c)
> 
> proc.time()
   user  system elapsed 
  0.382   0.118   0.544 
--------[begin src/Makevars]--------
# -*- mode: makefile-gmake -*-
BH=/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include

################################################################################
## Package library flags.
PKG_LIBS    = $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) $(SHLIB_OPENMP_CXXFLAGS)

# Release options
PKG_CFLAGS  =  -D_isrxode2_
PKG_CXXFLAGS = $(SHLIB_OPENMP_CXXFLAGS) -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"$(BH)"
--------[end src/Makevars]--------
--------[begin R/RxODE_md5.R]--------
rxode2.md5 <- "9fc4d858f6bdf3a7a5f092cc4a255a0f"

--------[end R/RxODE_md5.R]--------
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include   -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include" -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c approx.c -o approx.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include   -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include" -fPIC  -Wall -g -O2  -c boost.cpp -o boost.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c box.c -o box.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c call_dvode.c -o call_dvode.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c cfode.c -o cfode.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c cfode_static.c -o cfode_static.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c common.c -o common.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c corfailure.c -o corfailure.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c correction.c -o correction.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c daxpy.c -o daxpy.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c ddot.c -o ddot.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c dgefa.c -o dgefa.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c dgesl.c -o dgesl.o
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c dgpadm.f -o dgpadm.o
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c dlsoda.f -o dlsoda.o
dlsoda.f:705:0:

       IF (IREDO .EQ. 0) GO TO 690
 
Warning: ‘iredo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
dlsoda.f:499:0:

      1   R, RH, RHDN, RHSM, RHUP, TOLD, DMNORM
 
Warning: ‘rh’ may be used uninitialized in this function [-Wmaybe-uninitialized]
dlsoda.f:2874:0:

       IF (IHIT) T = TCRIT
 
Warning: ‘tcrit’ may be used uninitialized in this function [-Wmaybe-uninitialized]
dlsoda.f:2874:0: Warning: ‘ihit’ may be used uninitialized in this function [-Wmaybe-uninitialized]
dlsoda.f:2615:0:

       IF (H0 .NE. 0.0D0 .AND. (T + H0 - TCRIT)*H0 .GT. 0.0D0)
 
Warning: ‘h0’ may be used uninitialized in this function [-Wmaybe-uninitialized]
dlsoda.f:2537:0:

       LEN1S = LEN1S + LENWM
 
Warning: ‘lenwm’ may be used uninitialized in this function [-Wmaybe-uninitialized]
dlsoda.f:2536:0:

       IF (JT .GE. 4) LENWM = (2*ML + MU + 1)*N + 2
 
Warning: ‘mu’ may be used uninitialized in this function [-Wmaybe-uninitialized]
dlsoda.f:2536:0: Warning: ‘ml’ may be used uninitialized in this function [-Wmaybe-uninitialized]
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c dop853.c -o dop853.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c dscal.c -o dscal.o
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c dsphiv.f -o dsphiv.o
dsphiv.f:270:0:

       wsp(iphih+mbrkdwn+1) = hj1j*wsp(iphih+2*mx+mbrkdwn-1)
 
Warning: ‘hj1j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include   -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include" -fPIC  -Wall -g -O2  -c etTran.cpp -o etTran.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include   -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include" -fPIC  -Wall -g -O2  -c expandGrid.cpp -o expandGrid.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include   -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include" -fPIC  -Wall -g -O2  -c expm.cpp -o expm.o
In file included from expm.cpp:6:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:27:
In file included from /Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfig.h:110:
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
#define ARMA_DONT_USE_OPENMP 1
        ^
expm.cpp:4:9: note: previous definition is here
#define ARMA_DONT_USE_OPENMP // Known to cause speed problems
        ^
expm.cpp:10:9: warning: 'ARMA_DONT_USE_OPENMP' macro redefined [-Wmacro-redefined]
#define ARMA_DONT_USE_OPENMP // Known to cause speed problems
        ^
/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include/RcppArmadillo/config/RcppArmadilloConfigGenerated.h:31:9: note: previous definition is here
#define ARMA_DONT_USE_OPENMP 1
        ^
2 warnings generated.
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c fnorm.c -o fnorm.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include   -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include" -fPIC  -Wall -g -O2  -c forder.cpp -o forder.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c handle_evid.c -o handle_evid.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c idamax.c -o idamax.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c init.c -o init.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c intdy.c -o intdy.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c lsoda.c -o lsoda.o
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c matexp.f -o matexp.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c matexp_HM98.c -o matexp_HM98.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c methodswitch.c -o methodswitch.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include   -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include" -fPIC  -Wall -g -O2  -c nearPD.cpp -o nearPD.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c omegaChol.c -o omegaChol.o
gfortran -mmacosx-version-min=10.13 -fno-optimize-sibling-calls  -fPIC  -Wall -g -O2  -c opkda2.f -o opkda2.o
opkda2.f:650:0:

       INTEGER FUNCTION IXSAV (IPAR, IVALUE, ISET)
 
Warning: ‘__result_ixsav’ may be used uninitialized in this function [-Wmaybe-uninitialized]
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c orderswitch.c -o orderswitch.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include   -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include" -fPIC  -Wall -g -O2  -c par_solve.cpp -o par_solve.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c prja.c -o prja.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c rprintf.c -o rprintf.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include   -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include" -fPIC  -Wall -g -O2  -c rxData.cpp -o rxData.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include   -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include" -fPIC  -Wall -g -O2  -c rxInv.cpp -o rxInv.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include   -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include" -fPIC  -Wall -g -O2  -c rxOptRep.cpp -o rxOptRep.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include   -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include" -fPIC  -Wall -g -O2  -c rxode2_df.cpp -o rxode2_df.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include   -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include" -fPIC  -Wall -g -O2  -c rxode2parse.cpp -o rxode2parse.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include   -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include" -fPIC  -Wall -g -O2  -c rxode2random.cpp -o rxode2random.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c sbuf.c -o sbuf.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c scaleh.c -o scaleh.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c solsy.c -o solsy.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c stoda.c -o stoda.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c strdup_printf.c -o strdup_printf.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c strncmp.c -o strncmp.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c utilc.c -o utilc.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include   -D_isrxode2_ -DBOOST_DISABLE_ASSERTS -DBOOST_NO_CXX11_STATIC_ASSERT -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -DBOOST_NO_AUTO_PTR -D_REENTRANT -isystem"/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include" -fPIC  -Wall -g -O2  -c utilcpp.cpp -o utilcpp.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2parse/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/rxode2random/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/PreciseSums/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/Rcpp/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/RcppArmadillo/include' -I'/Volumes/Builds/packages/high-sierra-x86_64/Rlib/4.2/BH/include' -I/usr/local/include  -D_isrxode2_ -fPIC  -Wall -g -O2  -c vmnorm.c -o vmnorm.o
clang++ -mmacosx-version-min=10.13 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o rxode2.so RcppExports.o approx.o boost.o box.o call_dvode.o cfode.o cfode_static.o common.o corfailure.o correction.o daxpy.o ddot.o dgefa.o dgesl.o dgpadm.o dlsoda.o dop853.o dscal.o dsphiv.o etTran.o expandGrid.o expm.o fnorm.o forder.o handle_evid.o idamax.o init.o intdy.o lsoda.o matexp.o matexp_HM98.o methodswitch.o nearPD.o omegaChol.o opkda2.o orderswitch.o par_solve.o prja.o rprintf.o rxData.o rxInv.o rxOptRep.o rxode2_df.o rxode2parse.o rxode2random.o sbuf.o scaleh.o solsy.o stoda.o strdup_printf.o strncmp.o utilc.o utilcpp.o vmnorm.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin18/8.2.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing via 'install.libs.R' to /Volumes/Builds/packages/high-sierra-x86_64/results/4.2/rxode2.Rcheck/00LOCK-rxode2/00new/rxode2
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rxode2)