* installing *source* package ‘r2sbml’ ...
** this is package ‘r2sbml’ version ‘0.1.0’
** package ‘r2sbml’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether clang++ -arch x86_64 -std=gnu++17 accepts -g... yes
checking for clang++ -arch x86_64 -std=gnu++17 option to enable C++11 features... none needed
checking how to run the C++ preprocessor... clang++ -arch x86_64 -std=gnu++17 -E
checking whether the compiler supports GNU C++... (cached) yes
checking whether clang++ -arch x86_64 -std=gnu++17 accepts -g... (cached) yes
checking for clang++ -arch x86_64 -std=gnu++17 option to enable C++11 features... (cached) none needed
checking for pkg-config... yes
checking for cmake... no
set CMAKE_BIN=/Applications/CMake.app/Contents/bin/cmake
set CMAKE_BIN=/Applications/CMake.app/Contents/bin/cmake
Extracting bundled libsbml-5.21.0 source...
set CC=clang -arch x86_64
set CC_LAUNCHER=
set CFLAGS=-I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2
set CXX_LAUNCHER=
set CXX=clang++
set CXXFLAGS=-arch x86_64 -std=gnu++17 -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2
set LDFLAGS=-L/opt/R/x86_64/lib
-- The C compiler identification is AppleClang 14.0.3.14030022
-- The CXX compiler identification is AppleClang 14.0.3.14030022
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/clang - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /Library/Developer/CommandLineTools/usr/bin/clang++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check for working C compiler: /Library/Developer/CommandLineTools/usr/bin/clang - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Could NOT find SWIG (missing: SWIG_EXECUTABLE SWIG_DIR)
-- Found PkgConfig: /opt/R/x86_64/bin/pkg-config (found version "0.29.2")
-- Looking for gzopen in /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/lib/libz.tbd
-- Looking for gzopen in /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/lib/libz.tbd - found
-- Looking for sin in m
-- Looking for sin in m - found
-- Performing Test LIBXML_LIBXML_TEST
-- Performing Test LIBXML_LIBXML_TEST - Success
-- LIBXML_LIBXML_TEST = 1
-- Found LIBXML: /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/lib/libxml2.tbd (found version "2.9.4")
-- Looking for BZ2_bzCompressInit in /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/lib/libbz2.tbd
-- Looking for BZ2_bzCompressInit in /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/lib/libbz2.tbd - found
-- Found BZ2: /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/lib/libbz2.tbd (found version "1.0.6")
-- Found ZLIB: /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/lib/libz.tbd (found version "1.2.11")
-- Looking for include file check.h
-- Looking for include file check.h - not found
-- Looking for include file expat.h
-- Looking for include file expat.h - found
-- Looking for include file errno.h
-- Looking for include file errno.h - found
-- Looking for include file ieeefp.h
-- Looking for include file ieeefp.h - not found
-- Looking for include file math.h
-- Looking for include file math.h - found
-- Looking for include file sys/types.h
-- Looking for include file sys/types.h - found
-- Looking for include file float.h
-- Looking for include file float.h - found
-- Looking for sqrt in m
-- Looking for sqrt in m - found
--
----------------------------------------------------------------------
libSBML version 5.21.0
----------------------------------------------------------------------
More information and the latest version are available online at
https://sbml.org/software/libsbml/
Please report problems using the issue tracker at
https://github.com/sbmlteam/libsbml/issues
To contact the developers directly, email libsbml-team@googlegroups.com
Configured on host 'ipyr'
host type = Darwin
host operating system = Darwin 22.4.0
host CPU architecture = x86_64
General build flags:
CC = /Library/Developer/CommandLineTools/usr/bin/clang
CXX = /Library/Developer/CommandLineTools/usr/bin/clang++
CPPFLAGS = -DMACOSX
CFLAGS = -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -O2 -Wno-tautological-constant-out-of-range-compare -Wno-tautological-undefined-compare -Wno-switch -Wno-deprecated-non-prototype -Wno-strict-prototypes -std=gnu17
CXXFLAGS = -arch x86_64 -std=gnu++17 -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -O2 -Wno-tautological-constant-out-of-range-compare -Wno-tautological-undefined-compare -Wno-switch -Wno-overloaded-virtual
LDFLAGS = -L/opt/R/x86_64/lib
XML parser library configuration:
XML library = libxml2
CPPFLAGS for XML = -I/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include
LIBS for XML = /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/lib/libxml2.tbd
Other libSBML configuration settings:
Installation $prefix = /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install
-- Value of $DYLD_LIBRARY_PATH =
-- Using SWIG = SWIG_EXECUTABLE-NOTFOUND (Version )
-- Using C++ namespace ('libsbml') = no
-- Building 'universal' binaries = no (using native arch)
--
-- Build examples = no
--
--
-- Support for SBML Level 3 Packages:
-- SBML 'arrays' package = OFF
-- SBML 'comp' package = OFF
-- SBML 'distrib' package = OFF
-- SBML 'dyn' package = OFF
-- SBML 'fbc' package = OFF
-- SBML 'groups' package = OFF
-- SBML 'l3v2extendedmath' package = ON
-- SBML 'layout' package = OFF
-- SBML 'multi' package = OFF
-- SBML 'qual' package = OFF
-- SBML 'render' package = OFF
-- SBML 'req' package = OFF
-- SBML 'spatial' package = OFF
--
-- Other potentially important settings:
-- Compression support is enabled for .zip and .gz files
-- Compression support is enabled for .bz2 files
--
----------------------------------------------------------------------
-- Configuring done (13.9s)
-- Generating done (0.3s)
CMake Warning:
Manually-specified variables were not used by the project:
BUILD_TESTING
-- Build files have been written to: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-build
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[ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/extension/L3v2extendedmathSBMLDocumentPlugin.cpp.o
[ 1%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathMathMLConsistencyValidator.cpp.o
[ 2%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/packages/l3v2extendedmath/validator/L3v2extendedmathUnitConsistencyValidator.cpp.o
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/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/conversion/ExpressionAnalyser.cpp:83:7: warning: initializer order does not match the declaration order [-Wreorder-ctor]
: mModel (NULL),
^~~~~~~~~~~~~
mODEs ()
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/conversion/ExpressionAnalyser.cpp:83:7: note: field 'mModel' will be initialized after field 'mODEs'
: mModel (NULL),
^~~~~~~~~~~~~
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/conversion/ExpressionAnalyser.cpp:86:5: note: field 'mNewVarCount' will be initialized after field 'mHiddenSpecies'
mNewVarCount(1),
^~~~~~~~~~~~~~~
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/conversion/ExpressionAnalyser.cpp:97:5: warning: field 'mNewVarCount' will be initialized after field 'mHiddenSpecies' [-Wreorder-ctor]
mNewVarCount(1),
^~~~~~~~~~~~~~~
mHiddenNodes(NULL)
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/conversion/ExpressionAnalyser.cpp:108:3: warning: initializer order does not match the declaration order [-Wreorder-ctor]
mModel( orig.mModel),
^~~~~~~~~~~~~~~~~~~~
mODEs(orig.mODEs)
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/conversion/ExpressionAnalyser.cpp:108:3: note: field 'mModel' will be initialized after field 'mODEs'
mModel( orig.mModel),
^~~~~~~~~~~~~~~~~~~~
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/conversion/ExpressionAnalyser.cpp:111:5: note: field 'mNewVarCount' will be initialized after field 'mHiddenSpecies'
mNewVarCount(orig.mNewVarCount),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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3 warnings generated.
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/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/conversion/SBMLRateRuleConverter.cpp:64:18: warning: unused variable 'term' [-Wunused-variable]
ASTNode* term = co.at(n).first;
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/conversion/SBMLRateRuleConverter.cpp:59:13: warning: unused function 'print_vectors' [-Wunused-function]
static void print_vectors(setCoeff co)
^
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2 warnings generated.
[ 15%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/conversion/SBMLStripPackageConverter.cpp.o
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/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/extension/ASTBasePlugin.cpp:320:5: warning: field 'mExtendedMathType' will be initialized after field 'mPkgASTNodeValues' [-Wreorder-ctor]
, mExtendedMathType(orig.mExtendedMathType)
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mPkgASTNodeValues(orig.mPkgASTNodeValues)
1 warning generated.
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/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/SBase.cpp:1398:8: warning: variable 'hasNestedTerms' set but not used [-Wunused-but-set-variable]
bool hasNestedTerms = false;
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/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:598:20: warning: '&&' within '||' [-Wlogical-op-parentheses]
is_in_table_ && (prev_tag_ != kTagCode && prev_tag_ != kTagPre))
~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:598:20: note: place parentheses around the '&&' expression to silence this warning
is_in_table_ && (prev_tag_ != kTagCode && prev_tag_ != kTagPre))
^
( )
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.h:7:
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagIgnored' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagIgnored, std::allocator<html2md::Converter::TagIgnored>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagIgnored, std::allocator<html2md::Converter::TagIgnored>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:100:21: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagIgnored>' requested here
auto tagIgnored = make_shared<Converter::TagIgnored>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagAnchor' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagAnchor, std::allocator<html2md::Converter::TagAnchor>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagAnchor, std::allocator<html2md::Converter::TagAnchor>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:110:23: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagAnchor>' requested here
tags_[kTagAnchor] = make_shared<Converter::TagAnchor>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagBreak' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagBreak, std::allocator<html2md::Converter::TagBreak>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagBreak, std::allocator<html2md::Converter::TagBreak>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:111:22: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagBreak>' requested here
tags_[kTagBreak] = make_shared<Converter::TagBreak>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagDiv' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagDiv, std::allocator<html2md::Converter::TagDiv>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagDiv, std::allocator<html2md::Converter::TagDiv>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:112:20: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagDiv>' requested here
tags_[kTagDiv] = make_shared<Converter::TagDiv>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagHeader1' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagHeader1, std::allocator<html2md::Converter::TagHeader1>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagHeader1, std::allocator<html2md::Converter::TagHeader1>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:113:24: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagHeader1>' requested here
tags_[kTagHeader1] = make_shared<Converter::TagHeader1>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagHeader2' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagHeader2, std::allocator<html2md::Converter::TagHeader2>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagHeader2, std::allocator<html2md::Converter::TagHeader2>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:114:24: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagHeader2>' requested here
tags_[kTagHeader2] = make_shared<Converter::TagHeader2>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagHeader3' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagHeader3, std::allocator<html2md::Converter::TagHeader3>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagHeader3, std::allocator<html2md::Converter::TagHeader3>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:115:24: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagHeader3>' requested here
tags_[kTagHeader3] = make_shared<Converter::TagHeader3>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagHeader4' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagHeader4, std::allocator<html2md::Converter::TagHeader4>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagHeader4, std::allocator<html2md::Converter::TagHeader4>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:116:24: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagHeader4>' requested here
tags_[kTagHeader4] = make_shared<Converter::TagHeader4>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagHeader5' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagHeader5, std::allocator<html2md::Converter::TagHeader5>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagHeader5, std::allocator<html2md::Converter::TagHeader5>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:117:24: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagHeader5>' requested here
tags_[kTagHeader5] = make_shared<Converter::TagHeader5>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagHeader6' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagHeader6, std::allocator<html2md::Converter::TagHeader6>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagHeader6, std::allocator<html2md::Converter::TagHeader6>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:118:24: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagHeader6>' requested here
tags_[kTagHeader6] = make_shared<Converter::TagHeader6>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagListItem' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagListItem, std::allocator<html2md::Converter::TagListItem>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagListItem, std::allocator<html2md::Converter::TagListItem>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:119:25: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagListItem>' requested here
tags_[kTagListItem] = make_shared<Converter::TagListItem>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagOption' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagOption, std::allocator<html2md::Converter::TagOption>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagOption, std::allocator<html2md::Converter::TagOption>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:120:23: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagOption>' requested here
tags_[kTagOption] = make_shared<Converter::TagOption>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagOrderedList' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagOrderedList, std::allocator<html2md::Converter::TagOrderedList>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagOrderedList, std::allocator<html2md::Converter::TagOrderedList>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:121:28: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagOrderedList>' requested here
tags_[kTagOrderedList] = make_shared<Converter::TagOrderedList>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagPre' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagPre, std::allocator<html2md::Converter::TagPre>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagPre, std::allocator<html2md::Converter::TagPre>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:122:20: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagPre>' requested here
tags_[kTagPre] = make_shared<Converter::TagPre>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagCode' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagCode, std::allocator<html2md::Converter::TagCode>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagCode, std::allocator<html2md::Converter::TagCode>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:123:21: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagCode>' requested here
tags_[kTagCode] = make_shared<Converter::TagCode>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagParagraph' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagParagraph, std::allocator<html2md::Converter::TagParagraph>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagParagraph, std::allocator<html2md::Converter::TagParagraph>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:124:26: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagParagraph>' requested here
tags_[kTagParagraph] = make_shared<Converter::TagParagraph>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagSpan' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagSpan, std::allocator<html2md::Converter::TagSpan>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagSpan, std::allocator<html2md::Converter::TagSpan>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:125:21: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagSpan>' requested here
tags_[kTagSpan] = make_shared<Converter::TagSpan>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagUnorderedList' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagUnorderedList, std::allocator<html2md::Converter::TagUnorderedList>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagUnorderedList, std::allocator<html2md::Converter::TagUnorderedList>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:126:30: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagUnorderedList>' requested here
tags_[kTagUnorderedList] = make_shared<Converter::TagUnorderedList>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagTitle' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagTitle, std::allocator<html2md::Converter::TagTitle>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagTitle, std::allocator<html2md::Converter::TagTitle>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:127:22: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagTitle>' requested here
tags_[kTagTitle] = make_shared<Converter::TagTitle>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagImage' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagImage, std::allocator<html2md::Converter::TagImage>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagImage, std::allocator<html2md::Converter::TagImage>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:128:20: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagImage>' requested here
tags_[kTagImg] = make_shared<Converter::TagImage>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagSeperator' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagSeperator, std::allocator<html2md::Converter::TagSeperator>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagSeperator, std::allocator<html2md::Converter::TagSeperator>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:129:26: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagSeperator>' requested here
tags_[kTagSeperator] = make_shared<Converter::TagSeperator>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagBold' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagBold, std::allocator<html2md::Converter::TagBold>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagBold, std::allocator<html2md::Converter::TagBold>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:132:18: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagBold>' requested here
auto tagBold = make_shared<Converter::TagBold>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagItalic' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagItalic, std::allocator<html2md::Converter::TagItalic>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagItalic, std::allocator<html2md::Converter::TagItalic>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:136:20: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagItalic>' requested here
auto tagItalic = make_shared<Converter::TagItalic>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagUnderline' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagUnderline, std::allocator<html2md::Converter::TagUnderline>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagUnderline, std::allocator<html2md::Converter::TagUnderline>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:142:26: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagUnderline>' requested here
tags_[kTagUnderline] = make_shared<Converter::TagUnderline>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagStrikethrought' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagStrikethrought, std::allocator<html2md::Converter::TagStrikethrought>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagStrikethrought, std::allocator<html2md::Converter::TagStrikethrought>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:144:28: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagStrikethrought>' requested here
auto tagStrighthrought = make_shared<Converter::TagStrikethrought>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagBlockquote' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagBlockquote, std::allocator<html2md::Converter::TagBlockquote>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagBlockquote, std::allocator<html2md::Converter::TagBlockquote>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:148:27: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagBlockquote>' requested here
tags_[kTagBlockquote] = make_shared<Converter::TagBlockquote>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagTable' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagTable, std::allocator<html2md::Converter::TagTable>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagTable, std::allocator<html2md::Converter::TagTable>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:151:22: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagTable>' requested here
tags_[kTagTable] = make_shared<Converter::TagTable>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagTableRow' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagTableRow, std::allocator<html2md::Converter::TagTableRow>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagTableRow, std::allocator<html2md::Converter::TagTableRow>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:152:25: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagTableRow>' requested here
tags_[kTagTableRow] = make_shared<Converter::TagTableRow>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagTableHeader' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagTableHeader, std::allocator<html2md::Converter::TagTableHeader>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagTableHeader, std::allocator<html2md::Converter::TagTableHeader>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:153:28: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagTableHeader>' requested here
tags_[kTagTableHeader] = make_shared<Converter::TagTableHeader>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'html2md::Converter::TagTableData' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3290:5: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagTableData, std::allocator<html2md::Converter::TagTableData>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of member function 'std::__shared_ptr_emplace<html2md::Converter::TagTableData, std::allocator<html2md::Converter::TagTableData>>::__shared_ptr_emplace' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:154:26: note: in instantiation of function template specialization 'std::make_shared<html2md::Converter::TagTableData>' requested here
tags_[kTagTableData] = make_shared<Converter::TagTableData>();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:50:8: warning: unused function 'ReplaceAll' [-Wunused-function]
size_t ReplaceAll(string *haystack, const string &needle, const char c) {
^
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.cpp:4:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/html2md/html2md.h:350:8: warning: private field 'is_in_table_row_' is not used [-Wunused-private-field]
bool is_in_table_row_ = false;
^
[ 41%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/ASTNode.cpp.o
33 warnings generated.
[ 42%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/math/DefinitionURLRegistry.cpp.o
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L3Parser.cpp:1113:11: warning: unused variable 'yybot' [-Wunused-variable]
int yybot = *yybottom;
^
L3Parser.cpp:1133:7: warning: unused variable 'yylno' [-Wunused-variable]
int yylno = yyrline[yyrule];
^
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2 warnings generated.
[ 45%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/units/FormulaUnitsData.cpp.o
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/math/MathML.cpp:404:18: warning: unused variable 'version' [-Wunused-variable]
unsigned int version = sbmlns->getVersion();
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/math/MathML.cpp:424:16: warning: unused variable 'n' [-Wunused-variable]
unsigned int n = DefinitionURLRegistry::getInstance().getNumDefinitionURLs();
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-src/src/sbml/math/MathML.cpp:2177:21: warning: unused variable 'name' [-Wunused-variable]
const string& name = element1.getName();
^
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[ 46%] Building CXX object src/CMakeFiles/sbml-static.dir/sbml/units/UnitKindList.cpp.o
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-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLNode.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLOutputStream.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLParser.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLToken.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLTokenizer.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLTriple.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XercesAttributes.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XercesHandler.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XercesNamespaces.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XercesParser.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XercesTranscode.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/AlgebraicRule.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/AssignmentRule.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/Compartment.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/CompartmentType.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/Constraint.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/Delay.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/Event.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/EventAssignment.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/ExpectedAttributes.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/FunctionDefinition.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/InitialAssignment.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/KineticLaw.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/ListOf.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/LocalParameter.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/Model.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/ModifierSpeciesReference.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/Parameter.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/Priority.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/RateRule.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/Reaction.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/Rule.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLConstructorException.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLError.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h
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-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLNamespaces.h
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-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLVisitor.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLWriter.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBO.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBase.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SimpleSpeciesReference.h
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-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SpeciesReference.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SpeciesType.h
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-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/Trigger.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/Unit.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/UnitDefinition.h
-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/UnitKind.h
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-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/extension/RegisterExtensions.h
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-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/lib/cmake/sbml-static-targets.cmake
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-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/share/libsbml/NEWS.txt
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-- Installing: /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/lib/pkgconfig/libsbml.pc
configure: creating ./config.status
config.status: creating src/Makevars
Final src/Makevars
PKG_CPPFLAGS= -I/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/
PKG_LIBS= $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) -L/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/lib/ -lsbml-static -lxml2 -lbz2
# r2sbml.so statically links libsbml, so it inherits the debug info of every
# libsbml object the linker pulls in. Removing it takes the installed shared
# object from ~65MB to ~6.6MB. Global symbols are kept, so the R-level
# interface is unaffected; only DWARF is discarded.
#
# Guarded on uname because the flag spelling differs: GNU binutils uses
# --strip-debug, Apple's strip uses -S. Anything else is left alone.
all: $(SHLIB) strippedLib
strippedLib: $(SHLIB)
@if command -v strip >/dev/null 2>&1; then \
case `uname -s` in \
Linux) strip --strip-debug $(SHLIB) || true ;; \
Darwin) strip -S $(SHLIB) || true ;; \
esac; \
fi
.PHONY: all strippedLib
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/ -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/ -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c compartmentInfo.cpp -o compartmentInfo.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/ -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c convertReactions.cpp -o convertReactions.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/ -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c echoSBML.cpp -o echoSBML.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/ -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c getMath.cpp -o getMath.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/ -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c getModel.cpp -o getModel.o
In file included from compartmentInfo.cpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:298:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const SBMLError& error);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const SBMLError &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const SBMLError &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from compartmentInfo.cpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:317:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const std::list<SBMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::list<SBMLError> &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::list<SBMLError> &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from compartmentInfo.cpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:326:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const std::vector<SBMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::vector<SBMLError> &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::vector<SBMLError> &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from getMath.cpp:47:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:298:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const SBMLError& error);
^
In file included from getModel.cpp:3:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:298:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const SBMLError& error);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const SBMLError &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const SBMLError &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from getModel.cpp:3:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:317:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const std::list<SBMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::list<SBMLError> &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::list<SBMLError> &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from getModel.cpp:3:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:326:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const std::vector<SBMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::vector<SBMLError> &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::vector<SBMLError> &')
virtual void add (const std::vector<XMLError*>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const SBMLError &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const SBMLError &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from getMath.cpp:47:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:317:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const std::list<SBMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::list<SBMLError> &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::list<SBMLError> &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from getMath.cpp:47:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:326:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const std::vector<SBMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::vector<SBMLError> &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::vector<SBMLError> &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from echoSBML.cpp:3:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:298:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const SBMLError& error);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const SBMLError &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const SBMLError &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from echoSBML.cpp:3:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:317:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const std::list<SBMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::list<SBMLError> &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::list<SBMLError> &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from echoSBML.cpp:3:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:326:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const std::vector<SBMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::vector<SBMLError> &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::vector<SBMLError> &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from convertReactions.cpp:57:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:298:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const SBMLError& error);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const SBMLError &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const SBMLError &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from convertReactions.cpp:57:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:317:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const std::list<SBMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::list<SBMLError> &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::list<SBMLError> &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from convertReactions.cpp:57:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:326:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const std::vector<SBMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::vector<SBMLError> &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::vector<SBMLError> &')
virtual void add (const std::vector<XMLError*>& errors);
^
3 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/ -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c getSpeciesNum.cpp -o getSpeciesNum.o
3 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/ -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c paramInfo.cpp -o paramInfo.o
3 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/ -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c printSBML.cpp -o printSBML.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/ -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c reactionInfo.cpp -o reactionInfo.o
3 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/ -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c speciesInfo.cpp -o speciesInfo.o
In file included from getSpeciesNum.cpp:3:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:298:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const SBMLError& error);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const SBMLError &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const SBMLError &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from getSpeciesNum.cpp:3:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:317:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const std::list<SBMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::list<SBMLError> &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::list<SBMLError> &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from getSpeciesNum.cpp:3:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:326:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const std::vector<SBMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::vector<SBMLError> &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::vector<SBMLError> &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from paramInfo.cpp:10:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:298:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const SBMLError& error);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const SBMLError &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const SBMLError &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from paramInfo.cpp:10:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:317:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const std::list<SBMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::list<SBMLError> &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::list<SBMLError> &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from paramInfo.cpp:10:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:326:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const std::vector<SBMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::vector<SBMLError> &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::vector<SBMLError> &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from printSBML.cpp:3:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:298:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const SBMLError& error);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const SBMLError &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const SBMLError &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from printSBML.cpp:3:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:317:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const std::list<SBMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::list<SBMLError> &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::list<SBMLError> &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from printSBML.cpp:3:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:326:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const std::vector<SBMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::vector<SBMLError> &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::vector<SBMLError> &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from speciesInfo.cpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:298:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const SBMLError& error);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const SBMLError &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const SBMLError &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from speciesInfo.cpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:317:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const std::list<SBMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::list<SBMLError> &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::list<SBMLError> &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from speciesInfo.cpp:5:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:326:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const std::vector<SBMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::vector<SBMLError> &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::vector<SBMLError> &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from reactionInfo.cpp:10:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:298:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const SBMLError& error);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const SBMLError &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const SBMLError &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from reactionInfo.cpp:10:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:317:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const std::list<SBMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::list<SBMLError> &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::list<SBMLError> &')
virtual void add (const std::vector<XMLError*>& errors);
^
In file included from reactionInfo.cpp:10:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLTypes.h:48:
In file included from /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLDocument.h:305:
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/SBMLErrorLog.h:326:8: warning: 'SBMLErrorLog::add' hides overloaded virtual functions [-Woverloaded-virtual]
void add (const std::vector<SBMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:200:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::list<XMLError> &' vs 'const std::vector<SBMLError> &')
virtual void add (const std::list<XMLError>& errors);
^
/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/include/sbml/xml/XMLErrorLog.h:211:16: note: hidden overloaded virtual function 'XMLErrorLog::add' declared here: type mismatch at 1st parameter ('const std::vector<XMLError *> &' vs 'const std::vector<SBMLError> &')
virtual void add (const std::vector<XMLError*>& errors);
^
3 warnings generated.
3 warnings generated.
3 warnings generated.
3 warnings generated.
3 warnings generated.
3 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o r2sbml.so RcppExports.o compartmentInfo.o convertReactions.o echoSBML.o getMath.o getModel.o getSpeciesNum.o paramInfo.o printSBML.o reactionInfo.o speciesInfo.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -L/Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00_pkg_src/r2sbml/src/libsbml-install/lib/ -lsbml-static -lxml2 -lbz2 -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.5/r2sbml.Rcheck/00LOCK-r2sbml/00new/r2sbml/libs
** generating debug symbols (dSYM)
warning: no debug symbols in executable (-arch x86_64)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (r2sbml)