• using R version 4.4.0 (2024-04-24)
  • using platform: x86_64-apple-darwin20
  • R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
  • running under: macOS Ventura 13.3.1
  • using session charset: UTF-8
  • checking for file ‘protein8k/DESCRIPTION’ ... OK
  • checking extension type ... Package
  • this is package ‘protein8k’ version ‘0.0.1’
  • package encoding: UTF-8
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘protein8k’ can be installed ... [2s/2s] OK See the install log for details.
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking ‘build’ directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking code files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... [0s/0s] OK
  • checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
  • checking whether the package can be unloaded cleanly ... [0s/0s] OK
  • checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
  • checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
  • checking loading without being on the library search path ... [0s/0s] OK
  • checking dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... [2s/2s] OK
  • checking Rd files ... [0s/0s] NOTE checkRd: (-1) Protein-class.Rd:10-17: Lost braces in \itemize; meant \describe ? checkRd: (-1) Protein-class.Rd:11-15: Lost braces in \itemize; meant \describe ? checkRd: (-1) Protein-class.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) Protein-class.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) Protein-class.Rd:14: Lost braces in \itemize; meant \describe ? checkRd: (-1) Protein-class.Rd:16: Lost braces in \itemize; meant \describe ? checkRd: (-1) Protein-class.Rd:18-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) Protein-class.Rd:19: Lost braces in \enumerate; meant \describe ? checkRd: (-1) Protein-class.Rd:20: Lost braces in \enumerate; meant \describe ? checkRd: (-1) Protein-class.Rd:21: Lost braces in \enumerate; meant \describe ? checkRd: (-1) Protein-class.Rd:23: Lost braces in \enumerate; meant \describe ? checkRd: (-1) Protein-class.Rd:25: Lost braces in \enumerate; meant \describe ? checkRd: (-1) Protein-class.Rd:27: Lost braces in \enumerate; meant \describe ? checkRd: (-1) Protein-class.Rd:28: Lost braces in \enumerate; meant \describe ? checkRd: (-1) Protein-class.Rd:29: Lost braces in \enumerate; meant \describe ? checkRd: (-1) Protein-class.Rd:31: Lost braces in \enumerate; meant \describe ? checkRd: (-1) Protein-class.Rd:33: Lost braces in \enumerate; meant \describe ? checkRd: (-1) Protein-class.Rd:34: Lost braces in \enumerate; meant \describe ? checkRd: (-1) getAtomicRecord.Rd:9: Lost braces in \enumerate; meant \describe ? checkRd: (-1) getAtomicRecord.Rd:10: Lost braces in \enumerate; meant \describe ? checkRd: (-1) getAtomicRecord.Rd:11: Lost braces in \enumerate; meant \describe ? checkRd: (-1) getAtomicRecord.Rd:13: Lost braces in \enumerate; meant \describe ? checkRd: (-1) getAtomicRecord.Rd:15: Lost braces in \enumerate; meant \describe ? checkRd: (-1) getAtomicRecord.Rd:17: Lost braces in \enumerate; meant \describe ? checkRd: (-1) getAtomicRecord.Rd:18: Lost braces in \enumerate; meant \describe ? checkRd: (-1) getAtomicRecord.Rd:19: Lost braces in \enumerate; meant \describe ? checkRd: (-1) getAtomicRecord.Rd:21: Lost braces in \enumerate; meant \describe ? checkRd: (-1) getAtomicRecord.Rd:23: Lost braces in \enumerate; meant \describe ? checkRd: (-1) getAtomicRecord.Rd:24: Lost braces in \enumerate; meant \describe ? checkRd: (-1) p53_tetramerization.Rd:10-17: Lost braces in \itemize; meant \describe ? checkRd: (-1) p53_tetramerization.Rd:11-15: Lost braces in \itemize; meant \describe ? checkRd: (-1) p53_tetramerization.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) p53_tetramerization.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) p53_tetramerization.Rd:14: Lost braces in \itemize; meant \describe ? checkRd: (-1) p53_tetramerization.Rd:16: Lost braces in \itemize; meant \describe ? checkRd: (-1) p53_tetramerization.Rd:18-35: Lost braces in \itemize; meant \describe ? checkRd: (-1) p53_tetramerization.Rd:19: Lost braces in \enumerate; meant \describe ? checkRd: (-1) p53_tetramerization.Rd:20: Lost braces in \enumerate; meant \describe ? checkRd: (-1) p53_tetramerization.Rd:21: Lost braces in \enumerate; meant \describe ? checkRd: (-1) p53_tetramerization.Rd:23: Lost braces in \enumerate; meant \describe ? checkRd: (-1) p53_tetramerization.Rd:25: Lost braces in \enumerate; meant \describe ? checkRd: (-1) p53_tetramerization.Rd:27: Lost braces in \enumerate; meant \describe ? checkRd: (-1) p53_tetramerization.Rd:28: Lost braces in \enumerate; meant \describe ? checkRd: (-1) p53_tetramerization.Rd:29: Lost braces in \enumerate; meant \describe ? checkRd: (-1) p53_tetramerization.Rd:31: Lost braces in \enumerate; meant \describe ? checkRd: (-1) p53_tetramerization.Rd:33: Lost braces in \enumerate; meant \describe ? checkRd: (-1) p53_tetramerization.Rd:34: Lost braces in \enumerate; meant \describe ? checkRd: (-1) read.pdb.Rd:9-16: Lost braces in \itemize; meant \describe ? checkRd: (-1) read.pdb.Rd:10-14: Lost braces in \itemize; meant \describe ? checkRd: (-1) read.pdb.Rd:11: Lost braces in \itemize; meant \describe ? checkRd: (-1) read.pdb.Rd:12: Lost braces in \itemize; meant \describe ? checkRd: (-1) read.pdb.Rd:13: Lost braces in \itemize; meant \describe ? checkRd: (-1) read.pdb.Rd:15: Lost braces in \itemize; meant \describe ? checkRd: (-1) read.pdb.Rd:17-34: Lost braces in \itemize; meant \describe ? checkRd: (-1) read.pdb.Rd:18: Lost braces in \enumerate; meant \describe ? checkRd: (-1) read.pdb.Rd:19: Lost braces in \enumerate; meant \describe ? checkRd: (-1) read.pdb.Rd:20: Lost braces in \enumerate; meant \describe ? checkRd: (-1) read.pdb.Rd:22: Lost braces in \enumerate; meant \describe ? checkRd: (-1) read.pdb.Rd:24: Lost braces in \enumerate; meant \describe ? checkRd: (-1) read.pdb.Rd:26: Lost braces in \enumerate; meant \describe ? checkRd: (-1) read.pdb.Rd:27: Lost braces in \enumerate; meant \describe ? checkRd: (-1) read.pdb.Rd:28: Lost braces in \enumerate; meant \describe ? checkRd: (-1) read.pdb.Rd:30: Lost braces in \enumerate; meant \describe ? checkRd: (-1) read.pdb.Rd:32: Lost braces in \enumerate; meant \describe ? checkRd: (-1) read.pdb.Rd:33: Lost braces in \enumerate; meant \describe ?
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... [0s/0s] OK
  • checking LazyData ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking files in ‘vignettes’ ... OK
  • checking examples ... NONE
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes ... OK
  • checking re-building of vignette outputs ... [25s/26s] OK
  • checking PDF version of manual ... [6s/6s] OK
  • DONE Status: 1 NOTE
  • using check arguments '--no-clean-on-error '