- using R version 4.4.0 (2024-04-24)
- using platform: x86_64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘protein8k/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘protein8k’ version ‘0.0.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘protein8k’ can be installed ... [2s/2s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [2s/2s] OK
- checking Rd files ... [0s/0s] NOTE
checkRd: (-1) Protein-class.Rd:10-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Protein-class.Rd:11-15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Protein-class.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Protein-class.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Protein-class.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Protein-class.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Protein-class.Rd:18-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) Protein-class.Rd:19: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) Protein-class.Rd:20: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) Protein-class.Rd:21: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) Protein-class.Rd:23: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) Protein-class.Rd:25: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) Protein-class.Rd:27: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) Protein-class.Rd:28: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) Protein-class.Rd:29: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) Protein-class.Rd:31: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) Protein-class.Rd:33: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) Protein-class.Rd:34: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:9: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:10: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:11: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:13: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:15: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:17: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:18: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:19: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:21: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:23: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) getAtomicRecord.Rd:24: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:10-17: Lost braces in \itemize; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:11-15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:18-35: Lost braces in \itemize; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:19: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:20: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:21: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:23: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:25: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:27: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:28: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:29: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:31: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:33: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) p53_tetramerization.Rd:34: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:9-16: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.pdb.Rd:10-14: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.pdb.Rd:11: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.pdb.Rd:12: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.pdb.Rd:13: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.pdb.Rd:15: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.pdb.Rd:17-34: Lost braces in \itemize; meant \describe ?
checkRd: (-1) read.pdb.Rd:18: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:19: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:20: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:22: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:24: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:26: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:27: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:28: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:30: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:32: Lost braces in \enumerate; meant \describe ?
checkRd: (-1) read.pdb.Rd:33: Lost braces in \enumerate; meant \describe ?
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... NONE
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [25s/26s] OK
- checking PDF version of manual ... [6s/6s] OK
- DONE
Status: 1 NOTE
- using check arguments '--no-clean-on-error '