* installing *source* package ‘numOSL’ ...
** package ‘numOSL’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using Fortran compiler: ‘GNU Fortran (GCC) 12.2.0’
using SDK: ‘MacOSX11.3.sdk’
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c apfmmstd.f90 -o apfmmstd.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c apmamstd.f90 -o apmamstd.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c calDEXPxm.f90 -o calDEXPxm.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c calED1.f90 -o calED1.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c calED_fort.f90 -o calED_fort.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c calSGCED_fort.f90 -o calSGCED_fort.o
calSGCED_fort.f90:102:25:
102 | saturateDose = Xm
| ^
Warning: ‘xm’ may be used uninitialized [-Wmaybe-uninitialized]
calSGCED_fort.f90:37:26:
37 | Xm, Ym, ifmin, sumdose, sumdose2,&
| ^
note: ‘xm’ declared here
calSGCED_fort.f90:133:16:
133 | if (spltx2>=Ym) then
| ^
Warning: ‘ym’ may be used uninitialized [-Wmaybe-uninitialized]
calSGCED_fort.f90:37:30:
37 | Xm, Ym, ifmin, sumdose, sumdose2,&
| ^
note: ‘ym’ was declared here
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c calcSF.f90 -o calcSF.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c camED.f90 -o camED.o
calED_fort.f90:240:25:
240 | saturateDose = Xm
| ^
Warning: ‘xm’ may be used uninitialized [-Wmaybe-uninitialized]
calED_fort.f90:58:58:
58 | simltx(ndat), mcOSL(1), mcDose, Xm, Ym,&
| ^
note: ‘xm’ declared here
calED_fort.f90:242:12:
242 | if (inltx(1,1)>=Ym) then
| ^
Warning: ‘ym’ may be used uninitialized [-Wmaybe-uninitialized]
calED_fort.f90:58:62:
58 | simltx(ndat), mcOSL(1), mcDose, Xm, Ym,&
| ^
note: ‘ym’ was declared here
calcSF.f90:172:31:
172 | if ((fcn .ne. fcn) .or. (fcn .gt. huge(0.0D+00))) fcn = huge(0.0D+00)
| ^
Warning: ‘__result_fcn’ may be used uninitialized [-Wmaybe-uninitialized]
calcSF.f90:147:4:
147 | function fcn(x)
| ^
note: ‘__result_fcn’ was declared here
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c comb_next.f90 -o comb_next.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c compED.f90 -o compED.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c decomp_fort.f90 -o decomp_fort.o
compED.f90:74:24:
74 | maxlik = cmaxlik
| ^
Warning: ‘cmaxlik’ may be used uninitialized [-Wmaybe-uninitialized]
compED.f90:32:31:
32 | cmaxlik, cbic, inimu(ncomp+4)
| ^
note: ‘cmaxlik’ was declared here
compED.f90:75:18:
75 | bic = cbic
| ^
Warning: ‘cbic’ may be used uninitialized [-Wmaybe-uninitialized]
compED.f90:32:37:
32 | cmaxlik, cbic, inimu(ncomp+4)
| ^
note: ‘cbic’ was declared here
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c diffev.f90 -o diffev.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c fitGOK.f90 -o fitGOK.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c fitGrowth_fort.f90 -o fitGrowth_fort.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c fmmED.f90 -o fmmED.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c goodComp.f90 -o goodComp.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c hpSort.f90 -o hpSort.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c inipars.f90 -o inipars.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c interpolate.f90 -o interpolate.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c inverse_ger.f90 -o inverse_ger.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c inverse_sym.f90 -o inverse_sym.o
inverse_sym.f90:129:26:
129 | real ( kind(1.0d0) ) rsq
| 1
Warning: Unused variable ‘rsq’ declared at (1) [-Wunused-variable]
interpolate.f90:171:31:
171 | if ((fcn .ne. fcn) .or. (fcn .gt. huge(0.0D+00))) fcn = huge(0.0D+00)
| ^
Warning: ‘__result_fcn’ may be used uninitialized [-Wmaybe-uninitialized]
interpolate.f90:144:4:
144 | function fcn(x)
| ^
note: ‘__result_fcn’ was declared here
inverse_ger.f90:97:23:
97 | indxr(i) = irow
| ^
Warning: ‘irow’ may be used uninitialized [-Wmaybe-uninitialized]
inverse_ger.f90:54:27:
54 | integer:: i, icol, irow, j, k, l, ll,&
| ^
note: ‘irow’ was declared here
inverse_ger.f90:111:15:
111 | if(ll .ne. icol) then
| ^
Warning: ‘icol’ may be used uninitialized [-Wmaybe-uninitialized]
inverse_ger.f90:54:21:
54 | integer:: i, icol, irow, j, k, l, ll,&
| ^
note: ‘icol’ was declared here
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c linefit.f90 -o linefit.o
inipars.f90:97:52:
97 | allocate(aMat(ndim,ndim),bMat(ndim,1),stat=alc)
| ^
Warning: ‘ndim’ may be used uninitialized [-Wmaybe-uninitialized]
inipars.f90:33:18:
33 | integer:: ndim, alc, singular, origin
| ^
note: ‘ndim’ declared here
inipars.f90:109:8:
109 | if (any(outp(1:ndim-origin)<=0.0)) then
| ^
Warning: ‘origin’ may be used uninitialized [-Wmaybe-uninitialized]
inipars.f90:33:41:
33 | integer:: ndim, alc, singular, origin
| ^
note: ‘origin’ was declared here
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c lmfit.f90 -o lmfit.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c lmfit1.f90 -o lmfit1.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c lmfunc.f90 -o lmfunc.o
lmfit.f90:116:35:
116 | diag(i) = hess(i,i) * avgdv
| ^
Warning: ‘avgdv’ may be used uninitialized [-Wmaybe-uninitialized]
lmfit.f90:43:39:
43 | diag(n2), avgdv
| ^
note: ‘avgdv’ was declared here
linefit.f90:95:35:
95 | diag(i) = hess(i,i) * avgdv
| ^
Warning: ‘avgdv’ may be used uninitialized [-Wmaybe-uninitialized]
linefit.f90:32:52:
32 | hess(n2,n2), diag(n2), avgdv
| ^
note: ‘avgdv’ was declared here
lmfunc.f90:2:23:
2 | iflag,xd,yd,syd,model)
| 1
Warning: Unused dummy argument ‘iflag’ at (1) [-Wunused-dummy-argument]
lmfit1.f90:78:35:
78 | diag(i) = hess(i,i) * avgdv
| ^
Warning: ‘avgdv’ may be used uninitialized [-Wmaybe-uninitialized]
lmfit1.f90:39:39:
39 | diag(n2), avgdv,&
| ^
note: ‘avgdv’ was declared here
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c lmfunc1.f90 -o lmfunc1.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c mcCAM.f90 -o mcCAM.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c mcFMM2.f90 -o mcFMM2.o
lmfunc1.f90:1:40:
1 | subroutine lmfunc1(nd,n2,pars,fvec,iflag,&
| 1
Warning: Unused dummy argument ‘iflag’ at (1) [-Wunused-dummy-argument]
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c mcFMM3.f90 -o mcFMM3.o
mcCAM.f90:136:19:
136 | logy=gx0+log(ran)
| ^
Warning: ‘gx0’ may be used uninitialized [-Wmaybe-uninitialized]
mcCAM.f90:114:30:
114 | real(kind(1.0d0)):: ran, gx0, gx1, logy,&
| ^
note: ‘gx0’ was declared here
mcCAM.f90:248:10:
248 | if (gx1>=logy) exit
| ^
Warning: ‘gx1’ may be used uninitialized [-Wmaybe-uninitialized]
mcCAM.f90:114:35:
114 | real(kind(1.0d0)):: ran, gx0, gx1, logy,&
| ^
note: ‘gx1’ was declared here
mcCAM.f90:223:14:
223 | if (gR<=logy) exit
| ^
Warning: ‘gr’ may be used uninitialized [-Wmaybe-uninitialized]
mcCAM.f90:115:43:
115 | U, L, R, J, K, gL, gR,&
| ^
note: ‘gr’ was declared here
mcCAM.f90:206:14:
206 | if (gL<=logy) exit
| ^
Warning: ‘gl’ may be used uninitialized [-Wmaybe-uninitialized]
mcCAM.f90:115:39:
115 | U, L, R, J, K, gL, gR,&
| ^
note: ‘gl’ was declared here
mcCAM.f90:173:14:
173 | if (R>=upper) exit
| ^
Warning: ‘r’ may be used uninitialized [-Wmaybe-uninitialized]
mcCAM.f90:115:29:
115 | U, L, R, J, K, gL, gR,&
| ^
note: ‘r’ was declared here
mcCAM.f90:158:14:
158 | if (L<=lower) exit
| ^
Warning: ‘l’ may be used uninitialized [-Wmaybe-uninitialized]
mcCAM.f90:115:26:
115 | U, L, R, J, K, gL, gR,&
| ^
note: ‘l’ was declared here
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c mcFMM4.f90 -o mcFMM4.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c mcMam3.f90 -o mcMam3.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c mcMam4.f90 -o mcMam4.o
mcFMM2.f90:173:19:
173 | logy=gx0+log(ran)
| ^
Warning: ‘gx0’ may be used uninitialized [-Wmaybe-uninitialized]
mcFMM2.f90:146:30:
146 | real(kind(1.0d0)):: ran, gx0, gx1, logy, U, L, R, J, K, gL, gR,&
| ^
note: ‘gx0’ was declared here
mcFMM2.f90:282:14:
282 | if (gR<=logy) exit
| ^
Warning: ‘gr’ may be used uninitialized [-Wmaybe-uninitialized]
mcFMM2.f90:146:64:
146 | real(kind(1.0d0)):: ran, gx0, gx1, logy, U, L, R, J, K, gL, gR,&
| ^
note: ‘gr’ was declared here
mcMam3.f90:162:19:
162 | logy=gx0+log(ran)
| ^
Warning: ‘gx0’ may be used uninitialized [-Wmaybe-uninitialized]
mcMam3.f90:138:29:
138 | real(kind(1.0d0))::ran, gx0, gx1, logy, U, L,&
| ^
note: ‘gx0’ was declared here
mcMam3.f90:287:10:
287 | if (gx1>=logy) exit
| ^
Warning: ‘gx1’ may be used uninitialized [-Wmaybe-uninitialized]
mcMam3.f90:138:34:
138 | real(kind(1.0d0))::ran, gx0, gx1, logy, U, L,&
| ^
note: ‘gx1’ was declared here
mcMam3.f90:260:13:
260 | if(gR<=logy) exit
| ^
Warning: ‘gr’ may be used uninitialized [-Wmaybe-uninitialized]
mcMam3.f90:139:36:
139 | R, J, K, gL, gR, Error2(nED),&
| ^
note: ‘gr’ was declared here
mcMam3.f90:199:13:
199 | if(gL<=logy) exit
| ^
Warning: ‘gl’ may be used uninitialized [-Wmaybe-uninitialized]
mcMam3.f90:139:32:
139 | R, J, K, gL, gR, Error2(nED),&
| ^
note: ‘gl’ was declared here
mcMam4.f90:180:19:
180 | logy=gx0+log(ran)
| ^
Warning: ‘gx0’ may be used uninitialized [-Wmaybe-uninitialized]
mcMam4.f90:154:30:
154 | real(kind(1.0d0)):: ran, gx0, gx1, logy, U, L,&
| ^
note: ‘gx0’ was declared here
mcMam4.f90:288:14:
288 | if (gR<=logy) exit
| ^
Warning: ‘gr’ may be used uninitialized [-Wmaybe-uninitialized]
mcMam4.f90:155:37:
155 | R, J, K, gL, gR, Error2(nED),&
| ^
note: ‘gr’ was declared here
mcFMM3.f90:201:19:
201 | logy=gx0+log(ran)
| ^
Warning: ‘gx0’ may be used uninitialized [-Wmaybe-uninitialized]
mcFMM3.f90:171:30:
171 | real(kind(1.0d0)):: ran, gx0, gx1, logy, U, L, R, J, K, gL, gR, locVal,&
| ^
note: ‘gx0’ was declared here
mcFMM3.f90:382:10:
382 | if (Value>locVal) then
| ^
Warning: ‘locval’ may be used uninitialized [-Wmaybe-uninitialized]
mcFMM3.f90:171:72:
171 | real(kind(1.0d0)):: ran, gx0, gx1, logy, U, L, R, J, K, gL, gR, locVal,&
| ^
note: ‘locval’ was declared here
mcFMM3.f90:365:10:
365 | if (gx1>=logy) exit
| ^
Warning: ‘gx1’ may be used uninitialized [-Wmaybe-uninitialized]
mcFMM3.f90:171:35:
171 | real(kind(1.0d0)):: ran, gx0, gx1, logy, U, L, R, J, K, gL, gR, locVal,&
| ^
note: ‘gx1’ was declared here
mcFMM3.f90:332:15:
332 | if (gR<=logy) exit
| ^
Warning: ‘gr’ may be used uninitialized [-Wmaybe-uninitialized]
mcFMM3.f90:171:64:
171 | real(kind(1.0d0)):: ran, gx0, gx1, logy, U, L, R, J, K, gL, gR, locVal,&
| ^
note: ‘gr’ was declared here
mcFMM3.f90:307:15:
307 | if (gL<=logy) exit
| ^
Warning: ‘gl’ may be used uninitialized [-Wmaybe-uninitialized]
mcFMM3.f90:171:60:
171 | real(kind(1.0d0)):: ran, gx0, gx1, logy, U, L, R, J, K, gL, gR, locVal,&
| ^
note: ‘gl’ was declared here
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c minpack.f90 -o minpack.o
minpack.f90:982:11:
982 | integer i
| 1
Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable]
minpack.f90:993:22:
993 | real ( dbdbx ) qnorm
| 1
Warning: Unused variable ‘qnorm’ declared at (1) [-Wunused-variable]
minpack.f90:1264:11:
1264 | integer i
| 1
Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable]
minpack.f90:140:11:
140 | integer i
| 1
Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable]
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c minpack1.f90 -o minpack1.o
minpack1.f90:89:11:
89 | integer i
| 1
Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable]
mcFMM4.f90:231:19:
231 | logy=gx0+log(ran)
| ^
Warning: ‘gx0’ may be used uninitialized [-Wmaybe-uninitialized]
mcFMM4.f90:197:30:
197 | real(kind(1.0d0)):: ran, gx0, gx1, logy, U, L, R, J, K, gL, gR, locVal,&
| ^
note: ‘gx0’ was declared here
mcFMM4.f90:442:10:
442 | if (Value>locVal) then
| ^
Warning: ‘locval’ may be used uninitialized [-Wmaybe-uninitialized]
mcFMM4.f90:197:72:
197 | real(kind(1.0d0)):: ran, gx0, gx1, logy, U, L, R, J, K, gL, gR, locVal,&
| ^
note: ‘locval’ was declared here
mcFMM4.f90:421:10:
421 | if (gx1>=logy) exit
| ^
Warning: ‘gx1’ may be used uninitialized [-Wmaybe-uninitialized]
mcFMM4.f90:197:35:
197 | real(kind(1.0d0)):: ran, gx0, gx1, logy, U, L, R, J, K, gL, gR, locVal,&
| ^
note: ‘gx1’ was declared here
mcFMM4.f90:384:14:
384 | if (gR<=logy) exit
| ^
Warning: ‘gr’ may be used uninitialized [-Wmaybe-uninitialized]
mcFMM4.f90:197:64:
197 | real(kind(1.0d0)):: ran, gx0, gx1, logy, U, L, R, J, K, gL, gR, locVal,&
| ^
note: ‘gr’ was declared here
mcFMM4.f90:355:14:
355 | if (gL<=logy) exit
| ^
Warning: ‘gl’ may be used uninitialized [-Wmaybe-uninitialized]
mcFMM4.f90:197:60:
197 | real(kind(1.0d0)):: ran, gx0, gx1, logy, U, L, R, J, K, gL, gR, locVal,&
| ^
note: ‘gl’ was declared here
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c norm.f90 -o norm.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c numHess.f90 -o numHess.o
numHess.f90:158:23:
158 | integer:: i
| 1
Warning: Unused variable ‘i’ declared at (1) [-Wunused-variable]
numHess.f90:196:26:
196 | end function func
| ^
Warning: ‘__result_func’ may be used uninitialized [-Wmaybe-uninitialized]
numHess.f90:154:8:
154 | function func(x)
| ^
note: ‘__result_func’ was declared here
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c numOSL_init.c -o numOSL_init.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c pnorm.f90 -o pnorm.o
gfortran -arch x86_64 -fPIC -Wall -g -O2 -c targfunc.f90 -o targfunc.o
clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o numOSL.so apfmmstd.o apmamstd.o calDEXPxm.o calED1.o calED_fort.o calSGCED_fort.o calcSF.o camED.o comb_next.o compED.o decomp_fort.o diffev.o fitGOK.o fitGrowth_fort.o fmmED.o goodComp.o hpSort.o inipars.o interpolate.o inverse_ger.o inverse_sym.o linefit.o lmfit.o lmfit1.o lmfunc.o lmfunc1.o mcCAM.o mcFMM2.o mcFMM3.o mcFMM4.o mcMam3.o mcMam4.o minpack.o minpack1.o norm.o numHess.o numOSL_init.o pnorm.o targfunc.o -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/numOSL.Rcheck/00LOCK-numOSL/00new/numOSL/libs
** generating debug symbols (dSYM)
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (numOSL)