- using R version 4.2.0 (2022-04-22)
- using platform: x86_64-apple-darwin17.0 (64-bit)
- using session charset: UTF-8
- checking for file ‘multiblock/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘multiblock’ version ‘0.8.6’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘multiblock’ can be installed ... [23s/27s] OK
See the install log for details.
- checking installed package size ... NOTE
installed size is 7.1Mb
sub-directories of 1Mb or more:
doc 1.5Mb
libs 4.3Mb
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [14s/14s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking compiled code ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [11s/11s] ERROR
Running examples in ‘multiblock-Ex.R’ failed
The error most likely occurred in:
> ### Name: basic
> ### Title: Single- and Two-Block Methods
> ### Aliases: basic
>
> ### ** Examples
>
> data(potato)
> X <- potato$Chemical
> y <- potato$Sensory[,1,drop=FALSE]
>
> pca.pot <- pca(X, ncomp = 2)
> pcr.pot <- pcr(y ~ X, ncomp = 2)
> pls.pot <- plsr(y ~ X, ncomp = 2)
> cca.pot <- cca(potato[1:2])
> ifa.pot <- ifa(potato[1:2])
Error in RGCCA::rgcca(blocks = X, connection = matrix(c(0, 1, 1, 0), 2, :
unused arguments (blocks = X, connection = matrix(c(0, 1, 1, 0), 2, 2))
Calls: ifa
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... [2s/2s] NONE
‘vignette_A_data.Rmd’ using ‘UTF-8’... [0s/0s] OK
‘vignette_B_basic.Rmd’ using ‘UTF-8’... [0s/0s] OK
‘vignette_C_unsupervised.Rmd’ using ‘UTF-8’... [0s/0s] OK
‘vignette_D_asca.Rmd’ using ‘UTF-8’... [0s/0s] OK
‘vignette_E_supervised.Rmd’ using ‘UTF-8’... [0s/0s] OK
‘vignette_F_complex.Rmd’ using ‘UTF-8’... [0s/0s] OK
- checking re-building of vignette outputs ... [25s/28s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘vignette_A_data.Rmd’ using rmarkdown
--- finished re-building ‘vignette_A_data.Rmd’
--- re-building ‘vignette_B_basic.Rmd’ using rmarkdown
Quitting from lines 66-79 [unnamed-chunk-3] (vignette_B_basic.Rmd)
Error: processing vignette 'vignette_B_basic.Rmd' failed with diagnostics:
unused arguments (blocks = X, connection = matrix(c(0, 1, 1, 0), 2, 2))
--- failed re-building ‘vignette_B_basic.Rmd’
--- re-building ‘vignette_C_unsupervised.Rmd’ using rmarkdown
Quitting from lines 82-97 [unnamed-chunk-3] (vignette_C_unsupervised.Rmd)
Error: processing vignette 'vignette_C_unsupervised.Rmd' failed with diagnostics:
unused arguments (blocks = X, connection = C)
--- failed re-building ‘vignette_C_unsupervised.Rmd’
--- re-building ‘vignette_D_asca.Rmd’ using rmarkdown
--- finished re-building ‘vignette_D_asca.Rmd’
--- re-building ‘vignette_E_supervised.Rmd’ using rmarkdown
--- finished re-building ‘vignette_E_supervised.Rmd’
--- re-building ‘vignette_F_complex.Rmd’ using rmarkdown
--- finished re-building ‘vignette_F_complex.Rmd’
SUMMARY: processing the following files failed:
‘vignette_B_basic.Rmd’ ‘vignette_C_unsupervised.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... OK
- DONE
Status: 2 ERRORs, 1 NOTE
- using check arguments '--no-clean-on-error '