Install log for 'moire'

* installing *source* package ‘moire’ ...
** this is package ‘moire’ version ‘3.7.0’
** package ‘moire’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++17
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c chain.cpp -o chain.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c combination_indices_generator.cpp -o combination_indices_generator.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c genotyping_data.cpp -o genotyping_data.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c main.cpp -o main.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c mcmc.cpp -o mcmc.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c mcmc_progress_bar.cpp -o mcmc_progress_bar.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c mcmc_utils.cpp -o mcmc_utils.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c parameters.cpp -o parameters.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c prob_any_missing.cpp -o prob_any_missing.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c profiler.cpp -o profiler.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppProgress/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c sampler.cpp -o sampler.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o moire.so RcppExports.o chain.o combination_indices_generator.o genotyping_data.o main.o mcmc.o mcmc_progress_bar.o mcmc_utils.o parameters.o prob_any_missing.o profiler.o sampler.o -L/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/lib -Wl,-rpath,/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.5/moire.Rcheck/00LOCK-moire/00new/moire/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (moire)