* installing *source* package ‘mkde’ ... ** package ‘mkde’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c init.c -o init.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c mkdeFunctions.cpp -o mkdeFunctions.o mkdeFunctions.cpp:296:32: warning: unused variable 'voxy' [-Wunused-variable] double voxy = yGrid[i2]; // voxel y ^ mkdeFunctions.cpp:245:20: warning: variable 'sig2xy_inv' set but not used [-Wunused-but-set-variable] double sig2xy, sig2xy_inv; ^ mkdeFunctions.cpp:246:23: warning: unused variable 'xyDistSq' [-Wunused-variable] double distMaxXY, xyDistSq, voxx, voxy, xyterm; ^ mkdeFunctions.cpp:246:33: warning: unused variable 'voxx' [-Wunused-variable] double distMaxXY, xyDistSq, voxx, voxy, xyterm; ^ mkdeFunctions.cpp:246:39: warning: unused variable 'voxy' [-Wunused-variable] double distMaxXY, xyDistSq, voxx, voxy, xyterm; ^ mkdeFunctions.cpp:246:45: warning: unused variable 'xyterm' [-Wunused-variable] double distMaxXY, xyDistSq, voxx, voxy, xyterm; ^ mkdeFunctions.cpp:462:32: warning: unused variable 'voxy' [-Wunused-variable] double voxy = yGrid[i2]; // voxel y ^ mkdeFunctions.cpp:392:12: warning: variable 'totalT' set but not used [-Wunused-but-set-variable] double totalT; // T, Ttotal ^ mkdeFunctions.cpp:394:76: warning: unused variable 'xyDistSq' [-Wunused-variable] double distMaxXY0, distMaxXY1, haloMinX, haloMaxX, haloMinY, haloMaxY, xyDistSq, xyterm, bhattaFact; ^ mkdeFunctions.cpp:394:86: warning: unused variable 'xyterm' [-Wunused-variable] double distMaxXY0, distMaxXY1, haloMinX, haloMaxX, haloMinY, haloMaxY, xyDistSq, xyterm, bhattaFact; ^ mkdeFunctions.cpp:398:9: warning: unused variable 'i1min' [-Wunused-variable] int i1min = nX, i1max = 0, i2min = nY, i2max = 0; ^ mkdeFunctions.cpp:398:21: warning: unused variable 'i1max' [-Wunused-variable] int i1min = nX, i1max = 0, i2min = nY, i2max = 0; ^ mkdeFunctions.cpp:398:32: warning: unused variable 'i2min' [-Wunused-variable] int i1min = nX, i1max = 0, i2min = nY, i2max = 0; ^ mkdeFunctions.cpp:398:44: warning: unused variable 'i2max' [-Wunused-variable] int i1min = nX, i1max = 0, i2min = nY, i2max = 0; ^ mkdeFunctions.cpp:643:33: warning: unused variable 'th_id' [-Wunused-variable] int th_id = omp_get_thread_num(); ^ mkdeFunctions.cpp:631:32: warning: unused variable 'voxy' [-Wunused-variable] double voxy = yGrid[i2]; // voxel y ^ mkdeFunctions.cpp:572:24: warning: unused variable 'factor' [-Wunused-variable] double eX, eY, eZ, factor; ^ mkdeFunctions.cpp:574:27: warning: unused variable 'sig2xy_inv' [-Wunused-variable] double sig2xy, sig2z, sig2xy_inv, sig2z_inv; ^ mkdeFunctions.cpp:574:39: warning: unused variable 'sig2z_inv' [-Wunused-variable] double sig2xy, sig2z, sig2xy_inv, sig2z_inv; ^ mkdeFunctions.cpp:575:33: warning: unused variable 'xyDistSq' [-Wunused-variable] double distMaxXY, distMaxZ, xyDistSq, zDistSq, tmpZ, xyterm; ^ mkdeFunctions.cpp:575:43: warning: unused variable 'zDistSq' [-Wunused-variable] double distMaxXY, distMaxZ, xyDistSq, zDistSq, tmpZ, xyterm; ^ mkdeFunctions.cpp:575:52: warning: unused variable 'tmpZ' [-Wunused-variable] double distMaxXY, distMaxZ, xyDistSq, zDistSq, tmpZ, xyterm; ^ mkdeFunctions.cpp:575:58: warning: unused variable 'xyterm' [-Wunused-variable] double distMaxXY, distMaxZ, xyDistSq, zDistSq, tmpZ, xyterm; ^ mkdeFunctions.cpp:579:9: warning: unused variable 'i1min' [-Wunused-variable] int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0; ^ mkdeFunctions.cpp:579:21: warning: unused variable 'i1max' [-Wunused-variable] int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0; ^ mkdeFunctions.cpp:579:32: warning: unused variable 'i2min' [-Wunused-variable] int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0; ^ mkdeFunctions.cpp:579:44: warning: unused variable 'i2max' [-Wunused-variable] int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0; ^ mkdeFunctions.cpp:579:55: warning: unused variable 'i3min' [-Wunused-variable] int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0; ^ mkdeFunctions.cpp:579:67: warning: unused variable 'i3max' [-Wunused-variable] int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0; ^ mkdeFunctions.cpp:869:32: warning: unused variable 'voxy' [-Wunused-variable] double voxy = yGrid[i2]; // voxel y ^ mkdeFunctions.cpp:778:58: warning: unused variable 'xyDistSq' [-Wunused-variable] double distMaxXY0, distMaxXY1, distMaxZ0, distMaxZ1, xyDistSq, zDistSq, tmpZ, xyterm, bhattaFact; ^ mkdeFunctions.cpp:778:68: warning: unused variable 'zDistSq' [-Wunused-variable] double distMaxXY0, distMaxXY1, distMaxZ0, distMaxZ1, xyDistSq, zDistSq, tmpZ, xyterm, bhattaFact; ^ mkdeFunctions.cpp:778:77: warning: unused variable 'tmpZ' [-Wunused-variable] double distMaxXY0, distMaxXY1, distMaxZ0, distMaxZ1, xyDistSq, zDistSq, tmpZ, xyterm, bhattaFact; ^ mkdeFunctions.cpp:778:83: warning: unused variable 'xyterm' [-Wunused-variable] double distMaxXY0, distMaxXY1, distMaxZ0, distMaxZ1, xyDistSq, zDistSq, tmpZ, xyterm, bhattaFact; ^ mkdeFunctions.cpp:780:12: warning: unused variable 'loReflZ1' [-Wunused-variable] double loReflZ1, hiReflZ1; ^ mkdeFunctions.cpp:780:22: warning: unused variable 'hiReflZ1' [-Wunused-variable] double loReflZ1, hiReflZ1; ^ mkdeFunctions.cpp:784:9: warning: unused variable 'i1min' [-Wunused-variable] int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0; ^ mkdeFunctions.cpp:784:21: warning: unused variable 'i1max' [-Wunused-variable] int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0; ^ mkdeFunctions.cpp:784:32: warning: unused variable 'i2min' [-Wunused-variable] int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0; ^ mkdeFunctions.cpp:784:44: warning: unused variable 'i2max' [-Wunused-variable] int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0; ^ mkdeFunctions.cpp:784:55: warning: unused variable 'i3min' [-Wunused-variable] int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0; ^ mkdeFunctions.cpp:784:67: warning: unused variable 'i3max' [-Wunused-variable] int i1min = nX, i1max = 0, i2min = nY, i2max = 0, i3min = nZ, i3max = 0; ^ mkdeFunctions.cpp:1296:10: warning: unused variable 'ijk' [-Wunused-variable] long ijk = 0; ^ mkdeFunctions.cpp:1398:10: warning: unused variable 'ijk' [-Wunused-variable] long ijk = 0; ^ mkdeFunctions.cpp:1399:12: warning: unused variable 'xSz' [-Wunused-variable] double xSz = xGrid[1] - xGrid[0]; ^ mkdeFunctions.cpp:1400:12: warning: unused variable 'ySz' [-Wunused-variable] double ySz = yGrid[1] - yGrid[0]; ^ mkdeFunctions.cpp:1401:12: warning: unused variable 'densTmp' [-Wunused-variable] double densTmp; ^ 47 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o mkde.so init.o mkdeFunctions.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/mkde.Rcheck/00LOCK-mkde/00new/mkde/libs ** generating debug symbols (dSYM) ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mkde)