* installing *source* package ‘medfate’ ... ** package ‘medfate’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c aspwb.cpp -o aspwb.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c biophysicsutils.cpp -o biophysicsutils.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c carbon.cpp -o carbon.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c firebehaviour.cpp -o firebehaviour.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fireseverity.cpp -o fireseverity.o carbon.cpp:6:14: warning: unused variable 'carbonMolarMass' [-Wunused-const-variable] const double carbonMolarMass = 12.0107; //g*mol-1 ^ carbon.cpp:11:14: warning: unused variable 'leafCperDry' [-Wunused-const-variable] const double leafCperDry = 0.3; //g C · g dry-1 ^ carbon.cpp:12:14: warning: unused variable 'rootCperDry' [-Wunused-const-variable] const double rootCperDry = 0.4959; //g C · g dry-1 ^ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c forestutils.cpp -o forestutils.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fuelmoisture.cpp -o fuelmoisture.o 3 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c fuelstructure.cpp -o fuelstructure.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c growth.cpp -o growth.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c hydraulics.cpp -o hydraulics.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c hydrology.cpp -o hydrology.o hydraulics.cpp:12:14: warning: unused variable 'maxPsi' [-Wunused-const-variable] double const maxPsi = -0.000001; ^ hydraulics.cpp:13:14: warning: unused variable 'cmhead2MPa' [-Wunused-const-variable] double const cmhead2MPa = 0.00009804139; //Constant to transform cm head to MPa ^ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c incbeta.cpp -o incbeta.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c incgamma.cpp -o incgamma.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c inner_sperry.cpp -o inner_sperry.o 2 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c inner_sureau.cpp -o inner_sureau.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lightextinction_advanced.cpp -o lightextinction_advanced.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c lightextinction_basic.cpp -o lightextinction_basic.o incgamma.cpp:9:14: warning: unused variable 'machtol' [-Wunused-const-variable] const double machtol = 1.0E-15; ^ inner_sperry.cpp:10:14: warning: unused variable 'eps_xylem' [-Wunused-const-variable] const double eps_xylem = 1e3; // xylem elastic modulus (1 GPa = 1000 MPa) ^ 1 warning generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c modelInput.cpp -o modelInput.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c numerical_solving.cpp -o numerical_solving.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c paramutils.cpp -o paramutils.o 1 warning generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c phenology.cpp -o phenology.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c photosynthesis.cpp -o photosynthesis.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c root.cpp -o root.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c soil.cpp -o soil.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c soil_thermodynamics.cpp -o soil_thermodynamics.o soil.cpp:15:14: warning: unused variable 'cmTOMPa' [-Wunused-const-variable] const double cmTOMPa = 0.00009804139432; ^ soil.cpp:20:14: warning: unused variable 'mTOMPa' [-Wunused-const-variable] const double mTOMPa = 0.009804139432; //1/9.804139*0.000001; ^ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c spwb.cpp -o spwb.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tissuemoisture.cpp -o tissuemoisture.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c transpiration_advanced.cpp -o transpiration_advanced.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c transpiration_basic.cpp -o transpiration_basic.o 2 warnings generated. clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c windKatul.cpp -o windKatul.o spwb.cpp:486:106: warning: variable 'LAIcellmax' set but not used [-Wunused-but-set-variable] double s = 0.0, LAIcell = 0.0, LAIcelldead = 0.0, LAIcelllive = 0.0, LAIcellexpanded = 0.0, Cm = 0.0, LAIcellmax = 0.0; ^ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c windextinction.cpp -o windextinction.o transpiration_advanced.cpp:24:14: warning: unused variable 'SIGMA_Wm2' [-Wunused-const-variable] const double SIGMA_Wm2 = 5.67*1e-8; ^ transpiration_basic.cpp:179:10: warning: variable 's' set but not used [-Wunused-but-set-variable] double s = 0.0, LAIcell = 0.0, canopyHeight = 0.0, LAIcelllive = 0.0, LAIcellexpanded = 0.0,LAIcelldead = 0.0; ^ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/meteoland/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c woodformation.cpp -o woodformation.o 1 warning generated. 1 warning generated. 1 warning generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o medfate.so RcppExports.o aspwb.o biophysicsutils.o carbon.o firebehaviour.o fireseverity.o forestutils.o fuelmoisture.o fuelstructure.o growth.o hydraulics.o hydrology.o incbeta.o incgamma.o inner_sperry.o inner_sureau.o lightextinction_advanced.o lightextinction_basic.o modelInput.o numerical_solving.o paramutils.o phenology.o photosynthesis.o root.o soil.o soil_thermodynamics.o spwb.o tissuemoisture.o transpiration_advanced.o transpiration_basic.o windKatul.o windextinction.o woodformation.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/medfate.Rcheck/00LOCK-medfate/00new/medfate/libs ** generating debug symbols (dSYM) ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (medfate)