* using log directory ‘/Volumes/Builds/packages/big-sur-x86_64/results/4.4/mapi.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Ventura 13.3.1 * using session charset: UTF-8 * checking for file ‘mapi/DESCRIPTION’ ... OK * this is package ‘mapi’ version ‘1.1.4’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘mapi’ can be installed ... [10s/15s] OK See 'https://www.r-project.org/nosvn/R.check/r-oldrel-macos-x86_64/mapi-00install.html' for details. * used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ * used SDK: ‘MacOSX11.3.sdk’ * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s/3s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... OK * checking examples ... [1s/1s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [78s/112s] ERROR Running ‘testthat.R’ [77s/112s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview > # * https://testthat.r-lib.org/articles/special-files.html > > library(testthat) > library(mapi) > > test_check("mapi") Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Estimated halfwidth: 286.835888 Estimated halfwidth: 143.417944 Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE Building local cartesian grid... ... 1071 cells Building worldwide lat/lon grid... Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084 ... 2432 cells Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.463, system: 0.039, elapsed: 1.600 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 8.479, system: 0.067, elapsed: 8.778 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.183, system: 0.013, elapsed: 0.200 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.570, system: 0.190, elapsed: 4.267 seconds] Computing values for grid cells... ... done. [user: 0.163, system: 0.004, elapsed: 0.208 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 14.369, system: 0.330, elapsed: 15.650 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.530, system: 0.036, elapsed: 2.224 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 9.053, system: 0.115, elapsed: 15.809 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.186, system: 0.013, elapsed: 0.278 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.622, system: 0.167, elapsed: 5.302 seconds] Computing values for grid cells... ... done. [user: 0.164, system: 0.003, elapsed: 0.230 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 15.085, system: 0.360, elapsed: 24.699 seconds] MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.551, system: 0.036, elapsed: 2.632 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 8.955, system: 0.069, elapsed: 21.846 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.186, system: 0.011, elapsed: 0.460 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.616, system: 0.172, elapsed: 6.865 seconds] Computing values for grid cells... ... done. [user: 0.169, system: 0.004, elapsed: 0.217 seconds] Starting 4 permutations... ... parallelized over 2 cores ... 1 2 3 4 ... computing probabilities from permuted values ... ... done. [user: 1.062, system: 0.224, elapsed: 0.857 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 16.165, system: 0.549, elapsed: 34.054 seconds] Building local cartesian grid... ... 1071 cells MAPI COMPUTATION STARTED Checking data... `metric` provided as a vector Unique names ... OK All samples used in metric ... OK ... 200 samples and 39800 metric left. Building 20100 elliptical polygons... ... 20100 ellipses. [user: 1.458, system: 0.028, elapsed: 1.859 seconds] Computing spatial intersection between 1071 grid cells and 20100 ellipses... ... done. [user: 8.997, system: 0.069, elapsed: 11.173 seconds] Building sample pairs... ... 39800 sample pairs. [user: 0.182, system: 0.010, elapsed: 0.202 seconds] Matching grid cells with sample pairs... ... 2295394 matches found. [user: 3.432, system: 0.154, elapsed: 3.953 seconds] Computing values for grid cells... ... done. [user: 0.157, system: 0.003, elapsed: 0.196 seconds] Starting 50 permutations... ... serially ... | | | 0% | |== | 2% | |=== | 4% | |===== | 6% | |====== | 8% | |======== | 10% | |========== | 12% | |=========== | 14% | |============= | 16% | |============== | 18% | |================ | 20% | |================== | 22% | |=================== | 24% | |===================== | 26% | |====================== | 28% | |======================== | 30% | |========================== | 32% | |=========================== | 34% | |============================= | 36% | |============================== | 38% | |================================ | 40% | |================================== | 42% | |=================================== | 44% | |===================================== | 46% | |====================================== | 48% | |======================================== | 50% | |========================================== | 52% | |=========================================== | 54% | |============================================= | 56% | |============================================== | 58% | |================================================ | 60% | |================================================== | 62% | |=================================================== | 64% | |===================================================== | 66% | |====================================================== | 68% | |======================================================== | 70% | |========================================================== | 72% | |=========================================================== | 74% | |============================================================= | 76% | |============================================================== | 78% | |================================================================ | 80% | |================================================================== | 82% | |=================================================================== | 84% | |===================================================================== | 86% | |====================================================================== | 88% | |======================================================================== | 90% | |========================================================================== | 92% | |=========================================================================== | 94% | |============================================================================= | 96% | |============================================================================== | 98% | |================================================================================| 100% ... computing probabilities from permuted values ... ... done. [user: 9.955, system: 0.439, elapsed: 13.822 seconds] MAPI COMPUTATION ENDED. [TOTAL: user: 24.818, system: 0.732, elapsed: 31.965 seconds] Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ... ... 1 upper-tail and 3 lower-tail significant areas returned Building local cartesian grid... ... 1045 cells [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ──────────────────────── sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`). `actual`: 963429.6 `expected`: 963339.6 [ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ] Error: Test failures Execution halted * checking PDF version of manual ... [11s/13s] OK * DONE Status: 1 ERROR * using check arguments '--no-clean-on-error ' * elapsed time (check, wall clock): 2:48