- using R version 4.5.2 Patched (2026-01-31 r89382)
- using platform: x86_64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘mapi/DESCRIPTION’ ... OK
- this is package ‘mapi’ version ‘1.1.4’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘mapi’ can be installed ... [10s/10s] OK
See the install log for details.
- used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
- used SDK: ‘MacOSX11.3.1.sdk’
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/0s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
- checking loading without being on the library search path ... [0s/0s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [3s/3s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking compiled code ... OK
- checking examples ... [1s/2s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [103s/209s] ERROR
Running ‘testthat.R’ [103s/209s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.14.1, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.721, system: 0.073, elapsed: 1.847 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.317, system: 0.141, elapsed: 10.611 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.366, system: 0.034, elapsed: 0.239 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 9.132, system: 0.966, elapsed: 7.639 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.006, elapsed: 0.216 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 21.493, system: 1.260, elapsed: 21.178 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.626, system: 0.056, elapsed: 1.800 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.489, system: 0.110, elapsed: 10.604 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.212, system: 0.014, elapsed: 0.353 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.811, system: 0.685, elapsed: 28.127 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.003, elapsed: 0.181 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.977, system: 0.906, elapsed: 41.720 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.589, system: 0.040, elapsed: 2.069 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.583, system: 0.062, elapsed: 23.094 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.320, system: 0.019, elapsed: 1.449 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.020, system: 0.728, elapsed: 57.800 seconds]
Computing values for grid cells...
... done. [user: 0.179, system: 0.003, elapsed: 0.211 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.275, system: 0.296, elapsed: 1.038 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.660, system: 1.174, elapsed: 86.698 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.799, system: 0.044, elapsed: 2.036 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.693, system: 0.079, elapsed: 12.669 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.223, system: 0.017, elapsed: 0.933 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.822, system: 0.691, elapsed: 16.136 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.003, elapsed: 0.184 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 12.072, system: 0.656, elapsed: 19.555 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 31.625, system: 1.523, elapsed: 52.292 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
- checking PDF version of manual ... [12s/15s] OK
- DONE
Status: 1 ERROR
- using check arguments '--no-clean-on-error '