- using R version 4.5.2 Patched (2026-01-31 r89382)
- using platform: x86_64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 14.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘mapi/DESCRIPTION’ ... OK
- this is package ‘mapi’ version ‘1.1.4’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘mapi’ can be installed ... [14s/23s] OK
See the install log for details.
- used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
- used SDK: ‘NA’
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
- checking loading without being on the library search path ... [0s/1s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [3s/5s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking compiled code ... OK
- checking examples ... [2s/3s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [118s/421s] ERROR
Running ‘testthat.R’ [118s/421s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.839, system: 0.130, elapsed: 3.622 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.316, system: 0.409, elapsed: 21.025 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.246, system: 0.032, elapsed: 0.588 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.703, system: 1.192, elapsed: 39.967 seconds]
Computing values for grid cells...
... done. [user: 0.190, system: 0.013, elapsed: 0.376 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 21.012, system: 2.147, elapsed: 67.225 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.791, system: 0.098, elapsed: 4.387 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.223, system: 0.360, elapsed: 21.933 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.225, system: 0.031, elapsed: 1.447 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 9.701, system: 1.737, elapsed: 92.624 seconds]
Computing values for grid cells...
... done. [user: 0.176, system: 0.009, elapsed: 0.177 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 22.809, system: 2.664, elapsed: 123.393 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.788, system: 0.109, elapsed: 4.075 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.200, system: 0.235, elapsed: 18.408 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.286, system: 0.037, elapsed: 0.741 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.806, system: 1.399, elapsed: 93.008 seconds]
Computing values for grid cells...
... done. [user: 0.197, system: 0.020, elapsed: 0.309 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
2 1 4 3
... computing probabilities from permuted values ...
... done. [user: 1.413, system: 0.383, elapsed: 1.637 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 22.433, system: 2.371, elapsed: 119.753 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.812, system: 0.118, elapsed: 3.371 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 10.258, system: 0.355, elapsed: 22.168 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.224, system: 0.026, elapsed: 1.017 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 8.610, system: 1.721, elapsed: 54.549 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.006, elapsed: 0.187 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 12.769, system: 0.968, elapsed: 17.960 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 34.632, system: 3.431, elapsed: 100.707 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
- checking PDF version of manual ... [12s/13s] OK
- DONE
Status: 1 ERROR
- using check arguments '--no-clean-on-error '