- using R version 4.4.3 Patched (2026-02-12 r89409)
- using platform: x86_64-apple-darwin20
- R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
- running under: macOS Ventura 13.3.1
- using session charset: UTF-8
- checking for file ‘mapi/DESCRIPTION’ ... OK
- this is package ‘mapi’ version ‘1.1.4’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘mapi’ can be installed ... [11s/14s] OK
See the install log for details.
- used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
- used SDK: ‘MacOSX11.3.sdk’
- checking installed package size ... OK
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [0s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the package can be unloaded cleanly ... [0s/0s] OK
- checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
- checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
- checking loading without being on the library search path ... [0s/1s] OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [3s/3s] OK
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking compiled code ... OK
- checking examples ... [1s/2s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [106s/543s] ERROR
Running ‘testthat.R’ [106s/542s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.634, system: 0.057, elapsed: 3.109 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.612, system: 0.088, elapsed: 14.784 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.214, system: 0.022, elapsed: 0.993 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.765, system: 0.889, elapsed: 114.169 seconds]
Computing values for grid cells...
... done. [user: 0.171, system: 0.009, elapsed: 0.400 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 18.989, system: 1.136, elapsed: 134.624 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.715, system: 0.069, elapsed: 4.168 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.881, system: 0.256, elapsed: 23.599 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.222, system: 0.028, elapsed: 1.223 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.281, system: 1.135, elapsed: 131.315 seconds]
Computing values for grid cells...
... done. [user: 0.189, system: 0.017, elapsed: 0.454 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 19.882, system: 1.566, elapsed: 162.169 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.817, system: 0.089, elapsed: 3.868 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.693, system: 0.154, elapsed: 18.226 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.237, system: 0.022, elapsed: 0.953 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 6.962, system: 1.016, elapsed: 130.696 seconds]
Computing values for grid cells...
... done. [user: 0.178, system: 0.006, elapsed: 0.318 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
2 1 4 3
... computing probabilities from permuted values ...
... done. [user: 1.206, system: 0.296, elapsed: 1.358 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 20.815, system: 1.708, elapsed: 156.849 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.657, system: 0.057, elapsed: 3.258 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.801, system: 0.190, elapsed: 15.877 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.218, system: 0.020, elapsed: 0.366 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 7.898, system: 0.994, elapsed: 38.809 seconds]
Computing values for grid cells...
... done. [user: 0.164, system: 0.007, elapsed: 0.187 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 13.348, system: 0.970, elapsed: 19.528 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 33.866, system: 2.343, elapsed: 79.314 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
Saving _problems/test-MAPI_Varicell-15.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
Expected `sd(sf::st_area(grid.var))` to equal 963339.563502512.
Differences:
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error:
! Test failures.
Execution halted
- checking PDF version of manual ... [12s/17s] OK
- DONE
Status: 1 ERROR
- using check arguments '--no-clean-on-error '