• using R version 4.4.1 (2024-06-14)
  • using platform: x86_64-apple-darwin20
  • R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
  • running under: macOS Ventura 13.3.1
  • using session charset: UTF-8
  • checking for file ‘lme4/DESCRIPTION’ ... OK
  • this is package ‘lme4’ version ‘1.1-37’
  • package encoding: UTF-8
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘lme4’ can be installed ... [53s/50s] OK See the install log for details.
  • used C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
  • used SDK: ‘MacOSX11.3.sdk’
  • checking installed package size ... NOTE   installed size is 27.6Mb   sub-directories of 1Mb or more:     R 1.5Mb     doc 1.6Mb     libs 22.4Mb     testdata 1.3Mb
  • checking package directory ... OK
  • checking ‘build’ directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking code files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... [2s/2s] OK
  • checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
  • checking whether the package can be unloaded cleanly ... [2s/2s] OK
  • checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
  • checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
  • checking loading without being on the library search path ... [1s/2s] OK
  • checking whether startup messages can be suppressed ... [2s/2s] OK
  • checking dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... [17s/22s] OK
  • checking Rd files ... [1s/1s] OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... [0s/0s] OK
  • checking LazyData ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking R/sysdata.rda ... OK
  • checking line endings in C/C++/Fortran sources/headers ... OK
  • checking line endings in Makefiles ... OK
  • checking compilation flags in Makevars ... OK
  • checking for GNU extensions in Makefiles ... OK
  • checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
  • checking use of PKG_*FLAGS in Makefiles ... OK
  • checking compiled code ... OK
  • checking sizes of PDF files under ‘inst/doc’ ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking files in ‘vignettes’ ... OK
  • checking examples ... [11s/12s] OK
  • checking for unstated dependencies in ‘tests’ ... OK
  • checking tests ... [147s/186s] OK   Running ‘AAAtest-all.R’ [30s/40s]   Running ‘HSAURtrees.R’ [2s/3s]   Running ‘REMLdev.R’ [2s/4s]   Running ‘ST.R’ [2s/3s]   Running ‘agridat_gotway.R’ [2s/5s]   Running ‘bootMer.R’ [5s/13s]   Running ‘boundary.R’ [6s/9s]   Running ‘confint.R’ [3s/4s]   Running ‘devCritFun.R’ [2s/2s]   Running ‘drop.R’ [2s/3s]   Running ‘drop1contrasts.R’ [2s/2s]   Running ‘dynload.R’ [9s/12s]   Running ‘elston.R’ [2s/2s]   Running ‘evalCall.R’ [2s/2s]   Running ‘extras.R’ [1s/2s]   Running ‘falsezero_dorie.R’ [2s/2s]   Running ‘fewlevels.R’ [0s/0s]   Running ‘getME.R’ [2s/3s]   Running ‘glmer-1.R’ [3s/4s]   Running ‘glmerControlPass.R’ [3s/4s]   Running ‘glmerWarn.R’ [2s/2s]   Running ‘glmmExt.R’ [4s/4s]   Running ‘glmmWeights.R’ [4s/4s]   Running ‘hatvalues.R’ [1s/1s]   Running ‘is.R’ [2s/2s]   Running ‘lmList-tst.R’ [1s/2s]   Running ‘lme4_nlme.R’ [1s/2s]   Running ‘lmer-0.R’ [2s/2s]   Running ‘lmer-1.R’ [1s/1s]   Running ‘lmer-conv.R’ [1s/1s]   Running ‘lmer2_ex.R’ [1s/1s]   Running ‘methods.R’ [2s/2s]   Running ‘minval.R’ [1s/1s]   Running ‘modFormula.R’ [2s/2s]   Running ‘nbinom.R’ [1s/1s]   Running ‘nlmer-conv.R’ [1s/1s]   Running ‘nlmer.R’ [1s/1s]   Running ‘offset.R’ [2s/2s]   Running ‘optimizer.R’ [2s/2s]   Running ‘polytomous.R’ [1s/1s]   Running ‘prLogistic.R’ [1s/1s]   Running ‘predict_basis.R’ [1s/2s]   Running ‘predsim.R’ [2s/2s]   Running ‘priorWeights.R’ [3s/3s]   Running ‘priorWeightsModComp.R’ [2s/2s]   Running ‘profile-tst.R’ [1s/1s]   Running ‘refit.R’ [1s/1s]   Running ‘resids.R’ [1s/1s]   Running ‘respiratory.R’ [3s/3s]   Running ‘simulate.R’ [1s/1s]   Running ‘test-glmernbref.R’ [2s/2s]   Running ‘testOptControl.R’ [1s/1s]   Running ‘testcolonizer.R’ [1s/1s]   Running ‘testcrab.R’ [4s/4s]   Running ‘throw.R’ [2s/2s]   Running ‘varcorr.R’ [1s/2s]   Running ‘vcov-etc.R’ [1s/1s]
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes ... OK
  • checking re-building of vignette outputs ... [44s/45s] OK
  • checking PDF version of manual ... [7s/7s] OK
  • DONE Status: 1 NOTE
  • using check arguments '--no-clean-on-error '