* installing *source* package ‘koopman.dmd’ ...
** this is package ‘koopman.dmd’ version ‘0.2.2’
** package ‘koopman.dmd’ successfully unpacked and MD5 sums checked
** using staged installation
** using rustc 1.93.0 (254b59607 2026-01-19)
** using cargo 1.93.0 (083ac5135 2025-12-15)
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.1.sdk’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c entrypoint.c -o entrypoint.o
# CRAN build machines have no network access, so the whole dependency tree ships
# in vendor.tar.xz and cargo is pointed at it and run with --offline. See
# https://cran.r-project.org/web/packages/using_rust.html
#
# The source-replacement config goes in CARGO_HOME, NOT beside the manifest:
# cargo looks for .cargo/config.toml relative to its working directory, which is
# src/ here, so a config at src/rust/.cargo/config.toml is never read. The
# vendor directory is given as an absolute path for the same reason.
mkdir -p /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/.cargo
export PATH="/opt/R/x86_64/bin:/opt/gfortran/bin:/Applications/CMake.app/CMake.app/Contents/bin:/Library/Frameworks/R.framework/Resources/bin:/opt/gfortran/bin:/opt/R/x86_64/bin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/usr/local/go/bin:/opt/X11/bin:/Library/Apple/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Users/urbanek/.cargo/bin" && \
		export CARGO_HOME=/Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/.cargo && \
		if [ -f ./rust/vendor.tar.xz ]; then \
			tar xf ./rust/vendor.tar.xz -C ./rust && \
			printf '[source.crates-io]\nreplace-with = "vendored-sources"\n\n[source.vendored-sources]\ndirectory = "/Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/rust/vendor"\n' > /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/.cargo/config.toml && \
			cargo build --lib --release --offline --locked -j 2 \
				--manifest-path=./rust/Cargo.toml --target-dir ./rust/target; \
		else \
			cargo build --lib --release -j 2 \
				--manifest-path=./rust/Cargo.toml --target-dir ./rust/target; \
		fi
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
   Compiling proc-macro2 v1.0.107
   Compiling unicode-ident v1.0.24
   Compiling quote v1.0.47
   Compiling libc v0.2.189
   Compiling zerocopy v0.8.55
   Compiling autocfg v1.5.1
   Compiling libm v0.2.16
   Compiling num-traits v0.2.19
   Compiling cfg-if v1.0.4
   Compiling crossbeam-utils v0.8.22
   Compiling syn v2.0.119
   Compiling bytemuck v1.25.2
   Compiling crossbeam-epoch v0.9.20
   Compiling getrandom v0.2.17
   Compiling rand_core v0.6.4
   Compiling crossbeam-deque v0.8.7
   Compiling nano-gemm-codegen v0.1.0
   Compiling rayon-core v1.13.0
   Compiling version_check v0.9.5
   Compiling pulp v0.21.5
   Compiling thiserror v1.0.69
   Compiling paste v1.0.15
   Compiling reborrow v0.5.5
   Compiling byteorder v1.5.0
   Compiling bitflags v2.13.1
   Compiling heck v0.5.0
   Compiling either v1.17.0
   Compiling dyn-stack-macros v0.1.3
   Compiling dyn-stack v0.13.2
   Compiling rayon v1.12.0
   Compiling raw-cpuid v11.6.0
   Compiling once_cell v1.21.4
   Compiling seq-macro v0.3.6
   Compiling syn v1.0.109
   Compiling ucd-trie v0.1.7
   Compiling memchr v2.8.3
   Compiling nano-gemm-core v0.1.0
   Compiling pest v2.8.8
   Compiling ppv-lite86 v0.2.21
   Compiling thiserror-impl v1.0.69
   Compiling rand_chacha v0.3.1
   Compiling enum-as-inner v0.6.1
   Compiling rand v0.8.7
   Compiling pest_meta v2.8.8
   Compiling equator-macro v0.4.2
   Compiling num-integer v0.1.46
   Compiling sysctl v0.6.0
   Compiling num-complex v0.4.6
   Compiling pest_generator v2.8.8
   Compiling nano-gemm-f32 v0.1.0
   Compiling nano-gemm-c64 v0.1.0
   Compiling nano-gemm-f64 v0.1.0
   Compiling nano-gemm-c32 v0.1.0
   Compiling crossbeam-queue v0.3.13
   Compiling crossbeam-channel v0.5.16
   Compiling syn v3.0.3
   Compiling defer v0.2.1
   Compiling interpol v0.2.1
   Compiling pest_derive v2.8.8
   Compiling private-gemm-x86 v0.1.20
   Compiling crossbeam v0.8.4
   Compiling num-bigint v0.4.8
   Compiling equator v0.4.2
   Compiling equator-macro v0.2.1
   Compiling atomic-wait v1.1.0
   Compiling extendr-ffi v0.9.0
   Compiling equator v0.2.2
   Compiling spindle v0.2.6
   Compiling gemm-common v0.18.2
   Compiling qd v0.7.7
   Compiling py_literal v0.4.0
   Compiling gemm-f64 v0.18.2
   Compiling gemm-c32 v0.18.2
   Compiling gemm-f32 v0.18.2
   Compiling gemm-c64 v0.18.2
   Compiling faer-macros v0.21.0
   Compiling num_cpus v1.17.0
   Compiling thiserror v2.0.19
   Compiling generativity v1.2.1
   Compiling faer-traits v0.22.1
   Compiling gemm v0.18.2
   Compiling npyz v0.8.4
   Compiling thiserror-impl v2.0.19
   Compiling rand_distr v0.4.3
   Compiling lazy_static v1.5.0
   Compiling extendr-api v0.9.0
   Compiling extendr-macros v0.9.0
   Compiling readonly v0.2.14
   Compiling nano-gemm v0.1.3
   Compiling faer v0.22.6
   Compiling koopman-dmd v0.2.0
   Compiling koopman-dmd-r v0.2.0 (/Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/rust)
    Finished `release` profile [optimized] target(s) in 4m 33s
# Reclaim space unless a developer asked to keep it (NOT_CRAN=true).
if [ "" != "true" ]; then \
		rm -Rf /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/.cargo /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/rust/vendor && \
		rm -Rf ./rust/target/release/build; \
	fi
clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o koopman.dmd.so entrypoint.o -L./rust/target/release -lkoopman_dmd_r -lresolv -F/Library/Frameworks/R.framework/.. -framework R
rm -Rf /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/.cargo /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/rust/vendor ./rust/target/release/libkoopman_dmd_r.a
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00LOCK-koopman.dmd/00new/koopman.dmd/libs
** generating debug symbols (dSYM)
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(std-80c57efd13e5c60f.std.6723c73a6a2c3812-cgu.0.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(panic_unwind-609eec6b68420c23.panic_unwind.8a11b8e3a536324e-cgu.0.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(memchr-7633c0af176ce18f.memchr.62151324e58f9a71-cgu.0.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(std_detect-3d2b83b4ef271faf.std_detect.f484fbc3183826d-cgu.0.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(hashbrown-d63660a4bacc6e0d.hashbrown.d999ac00aa297d90-cgu.0.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(alloc-2ae10ae5c48735a7.alloc.cd66f8b944d0d1ee-cgu.0.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(core-ebd38e986244aca3.core.35ed32324c362c64-cgu.0.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(compiler_builtins-5f28702a8bd39742.compiler_builtins.3e851ac2cc681d13-cgu.087.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(compiler_builtins-5f28702a8bd39742.compiler_builtins.3e851ac2cc681d13-cgu.090.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(compiler_builtins-5f28702a8bd39742.compiler_builtins.3e851ac2cc681d13-cgu.127.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(compiler_builtins-5f28702a8bd39742.compiler_builtins.3e851ac2cc681d13-cgu.193.rcgu.o) unable to open object file: No such file or directory
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (koopman.dmd)