* installing *source* package ‘koopman.dmd’ ...
** this is package ‘koopman.dmd’ version ‘0.2.2’
** package ‘koopman.dmd’ successfully unpacked and MD5 sums checked
** using staged installation
** using rustc 1.93.0 (254b59607 2026-01-19)
** using cargo 1.93.0 (083ac5135 2025-12-15)
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.1.sdk’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c entrypoint.c -o entrypoint.o
# CRAN build machines have no network access, so the whole dependency tree ships
# in vendor.tar.xz and cargo is pointed at it and run with --offline. See
# https://cran.r-project.org/web/packages/using_rust.html
#
# The source-replacement config goes in CARGO_HOME, NOT beside the manifest:
# cargo looks for .cargo/config.toml relative to its working directory, which is
# src/ here, so a config at src/rust/.cargo/config.toml is never read. The
# vendor directory is given as an absolute path for the same reason.
mkdir -p /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/.cargo
export PATH="/opt/R/x86_64/bin:/opt/gfortran/bin:/Applications/CMake.app/CMake.app/Contents/bin:/Library/Frameworks/R.framework/Resources/bin:/opt/gfortran/bin:/opt/R/x86_64/bin:/usr/local/bin:/System/Cryptexes/App/usr/bin:/usr/bin:/bin:/usr/sbin:/sbin:/Library/TeX/texbin:/usr/local/go/bin:/opt/X11/bin:/Library/Apple/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/local/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/bin:/var/run/com.apple.security.cryptexd/codex.system/bootstrap/usr/appleinternal/bin:/Users/urbanek/.cargo/bin" && \
export CARGO_HOME=/Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/.cargo && \
if [ -f ./rust/vendor.tar.xz ]; then \
tar xf ./rust/vendor.tar.xz -C ./rust && \
printf '[source.crates-io]\nreplace-with = "vendored-sources"\n\n[source.vendored-sources]\ndirectory = "/Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/rust/vendor"\n' > /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/.cargo/config.toml && \
cargo build --lib --release --offline --locked -j 2 \
--manifest-path=./rust/Cargo.toml --target-dir ./rust/target; \
else \
cargo build --lib --release -j 2 \
--manifest-path=./rust/Cargo.toml --target-dir ./rust/target; \
fi
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
Compiling proc-macro2 v1.0.107
Compiling unicode-ident v1.0.24
Compiling quote v1.0.47
Compiling libc v0.2.189
Compiling zerocopy v0.8.55
Compiling autocfg v1.5.1
Compiling libm v0.2.16
Compiling num-traits v0.2.19
Compiling cfg-if v1.0.4
Compiling crossbeam-utils v0.8.22
Compiling syn v2.0.119
Compiling bytemuck v1.25.2
Compiling crossbeam-epoch v0.9.20
Compiling getrandom v0.2.17
Compiling rand_core v0.6.4
Compiling crossbeam-deque v0.8.7
Compiling nano-gemm-codegen v0.1.0
Compiling rayon-core v1.13.0
Compiling version_check v0.9.5
Compiling pulp v0.21.5
Compiling thiserror v1.0.69
Compiling paste v1.0.15
Compiling reborrow v0.5.5
Compiling byteorder v1.5.0
Compiling bitflags v2.13.1
Compiling heck v0.5.0
Compiling either v1.17.0
Compiling dyn-stack-macros v0.1.3
Compiling dyn-stack v0.13.2
Compiling rayon v1.12.0
Compiling raw-cpuid v11.6.0
Compiling once_cell v1.21.4
Compiling seq-macro v0.3.6
Compiling syn v1.0.109
Compiling ucd-trie v0.1.7
Compiling memchr v2.8.3
Compiling nano-gemm-core v0.1.0
Compiling pest v2.8.8
Compiling ppv-lite86 v0.2.21
Compiling thiserror-impl v1.0.69
Compiling rand_chacha v0.3.1
Compiling enum-as-inner v0.6.1
Compiling rand v0.8.7
Compiling pest_meta v2.8.8
Compiling equator-macro v0.4.2
Compiling num-integer v0.1.46
Compiling sysctl v0.6.0
Compiling num-complex v0.4.6
Compiling pest_generator v2.8.8
Compiling nano-gemm-f32 v0.1.0
Compiling nano-gemm-c64 v0.1.0
Compiling nano-gemm-f64 v0.1.0
Compiling nano-gemm-c32 v0.1.0
Compiling crossbeam-queue v0.3.13
Compiling crossbeam-channel v0.5.16
Compiling syn v3.0.3
Compiling defer v0.2.1
Compiling interpol v0.2.1
Compiling pest_derive v2.8.8
Compiling private-gemm-x86 v0.1.20
Compiling crossbeam v0.8.4
Compiling num-bigint v0.4.8
Compiling equator v0.4.2
Compiling equator-macro v0.2.1
Compiling atomic-wait v1.1.0
Compiling extendr-ffi v0.9.0
Compiling equator v0.2.2
Compiling spindle v0.2.6
Compiling gemm-common v0.18.2
Compiling qd v0.7.7
Compiling py_literal v0.4.0
Compiling gemm-f64 v0.18.2
Compiling gemm-c32 v0.18.2
Compiling gemm-f32 v0.18.2
Compiling gemm-c64 v0.18.2
Compiling faer-macros v0.21.0
Compiling num_cpus v1.17.0
Compiling thiserror v2.0.19
Compiling generativity v1.2.1
Compiling faer-traits v0.22.1
Compiling gemm v0.18.2
Compiling npyz v0.8.4
Compiling thiserror-impl v2.0.19
Compiling rand_distr v0.4.3
Compiling lazy_static v1.5.0
Compiling extendr-api v0.9.0
Compiling extendr-macros v0.9.0
Compiling readonly v0.2.14
Compiling nano-gemm v0.1.3
Compiling faer v0.22.6
Compiling koopman-dmd v0.2.0
Compiling koopman-dmd-r v0.2.0 (/Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/rust)
Finished `release` profile [optimized] target(s) in 4m 33s
# Reclaim space unless a developer asked to keep it (NOT_CRAN=true).
if [ "" != "true" ]; then \
rm -Rf /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/.cargo /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/rust/vendor && \
rm -Rf ./rust/target/release/build; \
fi
clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o koopman.dmd.so entrypoint.o -L./rust/target/release -lkoopman_dmd_r -lresolv -F/Library/Frameworks/R.framework/.. -framework R
rm -Rf /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/.cargo /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/rust/vendor ./rust/target/release/libkoopman_dmd_r.a
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00LOCK-koopman.dmd/00new/koopman.dmd/libs
** generating debug symbols (dSYM)
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(std-80c57efd13e5c60f.std.6723c73a6a2c3812-cgu.0.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(panic_unwind-609eec6b68420c23.panic_unwind.8a11b8e3a536324e-cgu.0.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(memchr-7633c0af176ce18f.memchr.62151324e58f9a71-cgu.0.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(std_detect-3d2b83b4ef271faf.std_detect.f484fbc3183826d-cgu.0.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(hashbrown-d63660a4bacc6e0d.hashbrown.d999ac00aa297d90-cgu.0.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(alloc-2ae10ae5c48735a7.alloc.cd66f8b944d0d1ee-cgu.0.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(core-ebd38e986244aca3.core.35ed32324c362c64-cgu.0.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(compiler_builtins-5f28702a8bd39742.compiler_builtins.3e851ac2cc681d13-cgu.087.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(compiler_builtins-5f28702a8bd39742.compiler_builtins.3e851ac2cc681d13-cgu.090.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(compiler_builtins-5f28702a8bd39742.compiler_builtins.3e851ac2cc681d13-cgu.127.rcgu.o) unable to open object file: No such file or directory
warning: (x86_64) /Volumes/Builds/packages/big-sur-x86_64/results/4.5/koopman.dmd.Rcheck/00_pkg_src/koopman.dmd/src/./rust/target/release/libkoopman_dmd_r.a(compiler_builtins-5f28702a8bd39742.compiler_builtins.3e851ac2cc681d13-cgu.193.rcgu.o) unable to open object file: No such file or directory
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (koopman.dmd)