• using R version 4.1.0 (2021-05-18)
• using platform: x86_64-apple-darwin17.0 (64-bit)
• using session charset: UTF-8
• checking for file ‘kinship2/DESCRIPTION’ ... OK
• this is package ‘kinship2’ version ‘1.8.5’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘kinship2’ can be installed ... [7s/9s] OK
• checking installed package size ... OK
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking R files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/11s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in Makefiles ... OK
• checking for GNU extensions in Makefiles ... OK
• checking include directives in Makefiles ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/3s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [13s/17s] OK
    Running ‘failure.R’ [1s/2s]
    Comparing ‘failure.Rout’ to ‘failure.Rout.save’ ... OK
    Running ‘makefam.R’ [1s/2s]
    Comparing ‘makefam.Rout’ to ‘makefam.Rout.save’ ... OK
    Running ‘monozygote.R’ [1s/2s]
    Comparing ‘monozygote.Rout’ to ‘monozygote.Rout.save’ ... OK
    Running ‘subscript.R’ [1s/2s]
    Comparing ‘subscript.Rout’ to ‘subscript.Rout.save’ ... OK
    Running ‘test.fixParents.R’ [1s/2s]
    Running ‘test.kinX.R’ [1s/2s]
    Comparing ‘test.kinX.Rout’ to ‘test.kinX.Rout.save’ ... OK
    Running ‘test.pedigree.shrink.R’ [2s/2s]
    Comparing ‘test.pedigree.shrink.Rout’ to ‘test.pedigree.shrink.Rout.save’ ...159,161d158
  < Warning message:
  < In options(stringsAsFactors = TRUE) :
  < 'options(stringsAsFactors = TRUE)' is deprecated and will be disabled
    Running ‘test.pedigree.unrelated.R’ [1s/2s]
    Comparing ‘test.pedigree.unrelated.Rout’ to ‘test.pedigree.unrelated.Rout.save’ ... OK
    Running ‘twin.R’ [1s/2s]
    Comparing ‘twin.Rout’ to ‘twin.Rout.save’ ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes in ‘inst/doc’ ... OK
• checking running R code from vignettes ... [0s/0s] NONE
    ‘pedigree.Rmd’ using ‘UTF-8’... [0s/0s] OK
• checking re-building of vignette outputs ... [3s/4s] OK
• checking PDF version of manual ... OK
• DONE
  Status: OK
• using check arguments '--no-clean-on-error '