* installing *source* package ‘gkwreg’ ... ** package ‘gkwreg’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gkwgetstartvalues.cpp -o gkwgetstartvalues.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gkwmle.cpp -o gkwmle.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c gkwreg-predict-resid.cpp -o gkwreg-predict-resid.o gkwmle.cpp:17236:9: warning: variable 'trimmed_mean' set but not used [-Wunused-but-set-variable] double trimmed_mean = 0.0; ^ In file included from RcppExports.cpp:5: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from RcppExports.cpp:5: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from RcppExports.cpp:5: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from RcppExports.cpp:5: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ 5 warnings generated. 1 warning generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o gkwreg.so RcppExports.o gkwgetstartvalues.o gkwmle.o gkwreg-predict-resid.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/gkwreg.Rcheck/00LOCK-gkwreg/00new/gkwreg/libs ** generating debug symbols (dSYM) ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_gkwbetareg -DCPPAD_FRAMEWORK -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/gkwbetareg_compile_20250501192852/gkwbetareg.cpp -o /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/gkwbetareg_compile_20250501192852/gkwbetareg.o In file included from /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/gkwbetareg_compile_20250501192852/gkwbetareg.cpp:17: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include/TMB.hpp:96: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/gkwbetareg_compile_20250501192852/gkwbetareg.cpp:17: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include/TMB.hpp:96: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ 3 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/gkwbetareg_compile_20250501192852/gkwbetareg.so /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/gkwbetareg_compile_20250501192852/gkwbetareg.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_bkwreg -DCPPAD_FRAMEWORK -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/bkwreg_compile_20250501193003/bkwreg.cpp -o /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/bkwreg_compile_20250501193003/bkwreg.o In file included from /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/bkwreg_compile_20250501193003/bkwreg.cpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include/TMB.hpp:96: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/bkwreg_compile_20250501193003/bkwreg.cpp:13: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include/TMB.hpp:96: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ 3 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/bkwreg_compile_20250501193003/bkwreg.so /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/bkwreg_compile_20250501193003/bkwreg.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_ekwreg -DCPPAD_FRAMEWORK -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/ekwreg_compile_20250501193050/ekwreg.cpp -o /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/ekwreg_compile_20250501193050/ekwreg.o In file included from /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/ekwreg_compile_20250501193050/ekwreg.cpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include/TMB.hpp:96: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/ekwreg_compile_20250501193050/ekwreg.cpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include/TMB.hpp:96: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ 3 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/ekwreg_compile_20250501193050/ekwreg.so /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/ekwreg_compile_20250501193050/ekwreg.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_gkwmletmb -DCPPAD_FRAMEWORK -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/gkwmletmb_compile_20250501193135/gkwmletmb.cpp -o /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/gkwmletmb_compile_20250501193135/gkwmletmb.o In file included from /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/gkwmletmb_compile_20250501193135/gkwmletmb.cpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include/TMB.hpp:96: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/gkwmletmb_compile_20250501193135/gkwmletmb.cpp:1: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include/TMB.hpp:96: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ 3 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/gkwmletmb_compile_20250501193135/gkwmletmb.so /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/gkwmletmb_compile_20250501193135/gkwmletmb.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_gkwreg -DCPPAD_FRAMEWORK -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/gkwreg_compile_20250501193217/gkwreg.cpp -o /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/gkwreg_compile_20250501193217/gkwreg.o In file included from /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/gkwreg_compile_20250501193217/gkwreg.cpp:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include/TMB.hpp:96: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/gkwreg_compile_20250501193217/gkwreg.cpp:12: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include/TMB.hpp:96: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ 3 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/gkwreg_compile_20250501193217/gkwreg.so /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/gkwreg_compile_20250501193217/gkwreg.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_kkwreg -DCPPAD_FRAMEWORK -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/kkwreg_compile_20250501193255/kkwreg.cpp -o /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/kkwreg_compile_20250501193255/kkwreg.o In file included from /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/kkwreg_compile_20250501193255/kkwreg.cpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include/TMB.hpp:96: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/kkwreg_compile_20250501193255/kkwreg.cpp:16: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include/TMB.hpp:96: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ 3 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/kkwreg_compile_20250501193255/kkwreg.so /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/kkwreg_compile_20250501193255/kkwreg.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_kwreg -DCPPAD_FRAMEWORK -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/kwreg_compile_20250501193333/kwreg.cpp -o /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/kwreg_compile_20250501193333/kwreg.o In file included from /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/kwreg_compile_20250501193333/kwreg.cpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include/TMB.hpp:96: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/kwreg_compile_20250501193333/kwreg.cpp:19: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include/TMB.hpp:96: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ 3 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/kwreg_compile_20250501193333/kwreg.so /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/kwreg_compile_20250501193333/kwreg.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include" -DTMB_EIGEN_DISABLE_WARNINGS -DTMB_LIB_INIT=R_init_mcreg -DCPPAD_FRAMEWORK -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppArmadillo/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/mcreg_compile_20250501193418/mcreg.cpp -o /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/mcreg_compile_20250501193418/mcreg.o In file included from /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/mcreg_compile_20250501193418/mcreg.cpp:17: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include/TMB.hpp:96: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/mcreg_compile_20250501193418/mcreg.cpp:17: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/TMB/include/TMB.hpp:96: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ 3 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/mcreg_compile_20250501193418/mcreg.so /var/folders/2b/t0kwbtmn3p7brv2mvx39c9cr0000gn/T//Rtmp5uVKjJ/mcreg_compile_20250501193418/mcreg.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gkwreg)