Install log for 'geosmooth'

* installing *source* package ‘geosmooth’ ...
** this is package ‘geosmooth’ version ‘0.1.0’
** package ‘geosmooth’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++17
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c geosmooth_native_stub.cpp -o geosmooth_native_stub.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c harmonic_smoothing_native.cpp -o harmonic_smoothing_native.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c local_pca_charts.cpp -o local_pca_charts.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c local_pca_charts_rcpp.cpp -o local_pca_charts_rcpp.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c local_second_order_svd_charts.cpp -o local_second_order_svd_charts.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c local_second_order_svd_charts_rcpp.cpp -o local_second_order_svd_charts_rcpp.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c lps_rcpp.cpp -o lps_rcpp.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c metric_graph_lowpass.cpp -o metric_graph_lowpass.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ps_lps_cache_rcpp.cpp -o ps_lps_cache_rcpp.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ssrhe_hessian_energy.cpp -o ssrhe_hessian_energy.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/ANN.cpp -o ANN/ANN.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/bd_fix_rad_search.cpp -o ANN/bd_fix_rad_search.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/bd_pr_search.cpp -o ANN/bd_pr_search.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/bd_search.cpp -o ANN/bd_search.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/bd_tree.cpp -o ANN/bd_tree.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/kd_dump.cpp -o ANN/kd_dump.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/kd_fix_rad_search.cpp -o ANN/kd_fix_rad_search.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/kd_pr_search.cpp -o ANN/kd_pr_search.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/kd_search.cpp -o ANN/kd_search.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/kd_split.cpp -o ANN/kd_split.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/kd_tree.cpp -o ANN/kd_tree.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/kd_util.cpp -o ANN/kd_util.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include -DR_NO_REMAP -DEIGEN_DONT_PARALLELIZE -D_Alignof=__alignof__ -DDLL_API= -include ../inst/include/geosmooth/eigen_config.hpp -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o geosmooth.so geosmooth_native_stub.o harmonic_smoothing_native.o local_pca_charts.o local_pca_charts_rcpp.o local_second_order_svd_charts.o local_second_order_svd_charts_rcpp.o lps_rcpp.o metric_graph_lowpass.o ps_lps_cache_rcpp.o ssrhe_hessian_energy.o ANN/ANN.o ANN/bd_fix_rad_search.o ANN/bd_pr_search.o ANN/bd_search.o ANN/bd_tree.o ANN/kd_dump.o ANN/kd_fix_rad_search.o ANN/kd_pr_search.o ANN/kd_search.o ANN/kd_split.o ANN/kd_tree.o ANN/kd_util.o RcppExports.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.5/geosmooth.Rcheck/00LOCK-geosmooth/00new/geosmooth/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geosmooth)