* installing *source* package ‘geokmeans’ ... ** this is package ‘geokmeans’ version ‘0.1.0’ ** package ‘geokmeans’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using C++17 using SDK: ‘MacOSX11.3.1.sdk’ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DGEOKM_R_BUILD -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DGEOKM_R_BUILD -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c kmeans_rcpp.cpp -o kmeans_rcpp.o In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from kmeans_rcpp.cpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable] Index count = 0; ^ In file included from kmeans_rcpp.cpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable] Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree ^ /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable] Index nsuper_et = 0; // Number of relaxed snodes in the original etree ^ In file included from kmeans_rcpp.cpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable] Index replacements = 0; ^ In file included from RcppExports.cpp:4: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from kmeans_rcpp.cpp:15: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37: In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45: /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable] int count = 0; ^ In file included from kmeans_rcpp.cpp:44: In file included from ./IOutils.h:9: ./misc_utils.h:143:5: warning: unused variable 'limit' [-Wunused-variable] int limit = 0; ^ In file included from kmeans_rcpp.cpp:45: ./algo_utils.h:231:16: warning: unused variable 'j' [-Wunused-variable] int i = 0, j = 0, size = dataset.size(); ^ ./algo_utils.h:706:43: warning: unused variable 'acc1' [-Wunused-variable] float temp = 0, temp1 = 0, temp2 = 0, acc1 = 0, acc2 = 0; ^ ./algo_utils.h:706:53: warning: unused variable 'acc2' [-Wunused-variable] float temp = 0, temp1 = 0, temp2 = 0, acc1 = 0, acc2 = 0; ^ In file included from kmeans_rcpp.cpp:47: ./lloyd_kmeans.h:36:17: warning: unused variable 'pu' [-Wunused-variable] print_utils pu; ^ ./lloyd_kmeans.h:44:9: warning: unused variable 'tt' [-Wunused-variable] int tt = 1; ^ In file included from kmeans_rcpp.cpp:48: In file included from ./geokmeans.h:9: ./geokm_utils.h:191:11: warning: unused variable 'shortestDist2' [-Wunused-variable] float shortestDist2 = 0; ^ ./geokm_utils.h:271:11: warning: unused variable 'shortestDist2' [-Wunused-variable] float shortestDist2 = 0; ^ ./geokm_utils.h:360:50: warning: unused variable 'closest_neighbor' [-Wunused-variable] int curr_center = 0, ot_center = 0, cnt = 0, closest_neighbor = 0, temp_val = 0, closest_ind = 0; ^ ./geokm_utils.h:360:72: warning: unused variable 'temp_val' [-Wunused-variable] int curr_center = 0, ot_center = 0, cnt = 0, closest_neighbor = 0, temp_val = 0, closest_ind = 0; ^ ./geokm_utils.h:360:86: warning: unused variable 'closest_ind' [-Wunused-variable] int curr_center = 0, ot_center = 0, cnt = 0, closest_neighbor = 0, temp_val = 0, closest_ind = 0; ^ ./geokm_utils.h:361:11: warning: unused variable 'shortestDist2' [-Wunused-variable] float shortestDist2 = 0; ^ ./geokm_utils.h:441:41: warning: unused variable 'cnt' [-Wunused-variable] int curr_center = 0, ot_center = 0, cnt = 0; ^ In file included from kmeans_rcpp.cpp:49: ./elkan.h:61:9: warning: unused variable 'tt' [-Wunused-variable] int tt = 1; ^ ./elkan.h:67:16: warning: unused variable 'dc_utils' [-Wunused-variable] dckm_utils dc_utils; ^ In file included from kmeans_rcpp.cpp:50: ./hamerly.h:42:9: warning: unused variable 'tt' [-Wunused-variable] int tt = 12; ^ ./hamerly.h:48:16: warning: unused variable 'dc_utils' [-Wunused-variable] dckm_utils dc_utils; ^ In file included from kmeans_rcpp.cpp:51: ./annulus.h:97:9: warning: unused variable 'v' [-Wunused-variable] int v = 0; ^ In file included from kmeans_rcpp.cpp:52: ./exponion.h:72:19: warning: unused variable 'ann' [-Wunused-variable] annulus_utils ann; ^ ./exponion.h:87:9: warning: unused variable 'tt' [-Wunused-variable] int tt = 1; ^ ./exponion.h:88:9: warning: unused variable 'my_point' [-Wunused-variable] int my_point = 424; ^ In file included from kmeans_rcpp.cpp:53: ./ball_kmeans_xf.h:31:1: warning: typedef requires a name [-Wmissing-declarations] typedef struct Neighbor ^~~~~~~ ./ball_kmeans_xf.h:434:21: warning: unused variable 'lenth' [-Wunused-variable] int lenth = old_now_index.size(); ^ ./ball_kmeans_xf.h:553:18: warning: variable 'now_centers_rows' set but not used [-Wunused-but-set-variable] unsigned int now_centers_rows; ^ ./ball_kmeans_xf.h:570:10: warning: unused variable 'start' [-Wunused-variable] auto start = std::chrono::high_resolution_clock::now(); ^ 5 warnings generated. In file included from kmeans_rcpp.cpp:49: ./elkan.h:56:40: warning: unused variable 'k' [-Wunused-variable] Tint my_cluster = 0, i = 0, j = 0, k = 0, l = 0, m = 0; ^ kmeans_rcpp.cpp:145:19: note: in instantiation of function template specialization 'elkan_kmeans' requested here output_data r = elkan_kmeans(X, num_clusters, static_cast(threshold), ^ In file included from kmeans_rcpp.cpp:49: ./elkan.h:56:47: warning: unused variable 'l' [-Wunused-variable] Tint my_cluster = 0, i = 0, j = 0, k = 0, l = 0, m = 0; ^ ./elkan.h:56:54: warning: unused variable 'm' [-Wunused-variable] Tint my_cluster = 0, i = 0, j = 0, k = 0, l = 0, m = 0; ^ ./elkan.h:57:37: warning: unused variable 'vec_sum' [-Wunused-variable] Tfloat temp_diff = 0, diff = 0, vec_sum = 0; ^ In file included from kmeans_rcpp.cpp:50: ./hamerly.h:38:40: warning: unused variable 'k' [-Wunused-variable] Tint my_cluster = 0, i = 0, j = 0, k = 0, l = 0, m = 0; ^ kmeans_rcpp.cpp:156:19: note: in instantiation of function template specialization 'hamerly_kmeans' requested here output_data r = hamerly_kmeans(X, num_clusters, static_cast(threshold), ^ In file included from kmeans_rcpp.cpp:50: ./hamerly.h:38:47: warning: unused variable 'l' [-Wunused-variable] Tint my_cluster = 0, i = 0, j = 0, k = 0, l = 0, m = 0; ^ ./hamerly.h:38:54: warning: unused variable 'm' [-Wunused-variable] Tint my_cluster = 0, i = 0, j = 0, k = 0, l = 0, m = 0; ^ ./hamerly.h:39:37: warning: unused variable 'vec_sum' [-Wunused-variable] Tfloat temp_diff = 0, diff = 0, vec_sum = 0, max123 = 0, dist =0; ^ In file included from kmeans_rcpp.cpp:51: ./annulus.h:88:24: warning: unused variable 'k' [-Wunused-variable] Tint i = 0, j = 0, k = 0, l = 0, m = 0; ^ kmeans_rcpp.cpp:167:19: note: in instantiation of function template specialization 'annulus' requested here output_data r = annulus(X, num_clusters, static_cast(threshold), ^ In file included from kmeans_rcpp.cpp:51: ./annulus.h:88:31: warning: unused variable 'l' [-Wunused-variable] Tint i = 0, j = 0, k = 0, l = 0, m = 0; ^ ./annulus.h:88:38: warning: unused variable 'm' [-Wunused-variable] Tint i = 0, j = 0, k = 0, l = 0, m = 0; ^ ./annulus.h:89:37: warning: unused variable 'vec_sum' [-Wunused-variable] Tfloat temp_diff = 0, diff = 0, vec_sum = 0, max = 0, dist2 =0; ^ ./annulus.h:89:50: warning: unused variable 'max' [-Wunused-variable] Tfloat temp_diff = 0, diff = 0, vec_sum = 0, max = 0, dist2 =0; ^ In file included from kmeans_rcpp.cpp:52: ./exponion.h:68:24: warning: unused variable 'k' [-Wunused-variable] Tint i = 0, j = 0, k = 0, l = 0, m = 0; ^ kmeans_rcpp.cpp:178:19: note: in instantiation of function template specialization 'exponion' requested here output_data r = exponion(X, num_clusters, static_cast(threshold), ^ In file included from kmeans_rcpp.cpp:52: ./exponion.h:68:31: warning: unused variable 'l' [-Wunused-variable] Tint i = 0, j = 0, k = 0, l = 0, m = 0; ^ ./exponion.h:68:38: warning: unused variable 'm' [-Wunused-variable] Tint i = 0, j = 0, k = 0, l = 0, m = 0; ^ ./exponion.h:69:37: warning: unused variable 'vec_sum' [-Wunused-variable] Tfloat temp_diff = 0, diff = 0, vec_sum = 0, max = 0, dist2 =0; ^ ./exponion.h:69:50: warning: unused variable 'max' [-Wunused-variable] Tfloat temp_diff = 0, diff = 0, vec_sum = 0, max = 0, dist2 =0; ^ In file included from kmeans_rcpp.cpp:48: In file included from ./geokmeans.h:9: ./geokm_utils.h:437:8: warning: unused variable 'radius' [-Wunused-variable] TD radius = 0; ^ ./exponion.h:101:9: note: in instantiation of function template specialization 'find_exp_neighbors' requested here find_exp_neighbors(centroids, center_dist_mat, closest_center_dist, center_center_dist, dist_counter); ^ kmeans_rcpp.cpp:178:19: note: in instantiation of function template specialization 'exponion' requested here output_data r = exponion(X, num_clusters, static_cast(threshold), ^ In file included from kmeans_rcpp.cpp:48: ./geokmeans.h:58:10: warning: unused variable 'my_cluster' [-Wunused-variable] Tint my_cluster = 0, i = 0, j = 0, k = 0, l = 0, m = 0; ^ kmeans_rcpp.cpp:189:19: note: in instantiation of function template specialization 'geokmeans' requested here output_data r = geokmeans(X, num_clusters, static_cast(threshold), ^ In file included from kmeans_rcpp.cpp:48: ./geokmeans.h:58:40: warning: unused variable 'k' [-Wunused-variable] Tint my_cluster = 0, i = 0, j = 0, k = 0, l = 0, m = 0; ^ ./geokmeans.h:58:47: warning: unused variable 'l' [-Wunused-variable] Tint my_cluster = 0, i = 0, j = 0, k = 0, l = 0, m = 0; ^ ./geokmeans.h:58:54: warning: unused variable 'm' [-Wunused-variable] Tint my_cluster = 0, i = 0, j = 0, k = 0, l = 0, m = 0; ^ ./geokmeans.h:59:37: warning: unused variable 'vec_sum' [-Wunused-variable] Tfloat temp_diff = 0, diff = 0, vec_sum = 0; ^ 54 warnings generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o geokmeans.so RcppExports.o kmeans_rcpp.o -F/Library/Frameworks/R.framework/.. -framework R installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.5/geokmeans.Rcheck/00LOCK-geokmeans/00new/geokmeans/libs ** generating debug symbols (dSYM) ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geokmeans)