* installing *source* package ‘genepop’ ...
** package ‘genepop’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c CT_tests.cpp -o CT_tests.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c F_est.cpp -o F_est.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c GenepopS.cpp -o GenepopS.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c HW_tests.cpp -o HW_tests.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RGenepop.cpp -o RGenepop.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
In file included from CT_tests.cpp:40:
./CT_tests.h:115:42: warning: unused variable 'pp' [-Wunused-variable]
std::vector<CPopulation *>::iterator p,pp; // CPopulation contient les popName()
^
./CT_tests.h:116:39: warning: unused variable 'p1' [-Wunused-variable]
std::vector<CGenotypes *>::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName()
^
./CT_tests.h:116:42: warning: unused variable 'p2' [-Wunused-variable]
std::vector<CGenotypes *>::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName()
^
In file included from GenepopS.cpp:56:
./CT_tests.h:115:42: warning: unused variable 'pp' [-Wunused-variable]
std::vector<CPopulation *>::iterator p,pp; // CPopulation contient les popName()
^
./CT_tests.h:116:39: warning: unused variable 'p1' [-Wunused-variable]
std::vector<CGenotypes *>::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName()
^
./CT_tests.h:116:42: warning: unused variable 'p2' [-Wunused-variable]
std::vector<CGenotypes *>::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName()
^
HW_tests.cpp:247:23: warning: variable 'necess_mark' set but not used [-Wunused-but-set-variable]
int possible_exact=0, necess_mark=0;
^
CT_tests.cpp:783:34: warning: unused variable 'p1' [-Wunused-variable]
vector<CGenotypes *>::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName()
^
CT_tests.cpp:783:37: warning: unused variable 'p2' [-Wunused-variable]
vector<CGenotypes *>::iterator p1,p2; // CGenotypes contient toute l'info sauf les popName()
^
HW_tests.cpp:1650:10: warning: variable 'kfi' set but not used [-Wunused-but-set-variable]
size_t kfi,allele, k;
^
GenepopS.cpp:1489:16: warning: variable 'popit' set but not used [-Wunused-but-set-variable]
size_t nb_all,popit;
^
5 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bootstrap.cpp -o bootstrap.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c conversions.cpp -o conversions.o
2 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c genepop.cpp -o genepop.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c multimig.cpp -o multimig.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c proba.cpp -o proba.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c settings.cpp -o settings.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DCOMPATIBILITYRCPP -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/RcppProgress/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c tools.cpp -o tools.o
4 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o genepop.so CT_tests.o F_est.o GenepopS.o HW_tests.o RGenepop.o RcppExports.o bootstrap.o conversions.o genepop.o multimig.o proba.o settings.o tools.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/genepop.Rcheck/00LOCK-genepop/00new/genepop/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (genepop)