* installing *source* package ‘fasttreeid’ ...
** package ‘fasttreeid’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++17
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c algebra.cpp -o algebra.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c identification.cpp -o identification.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c random.cpp -o random.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c rbridge.cpp -o rbridge.o
In file included from identification.cpp:1:
In file included from ./identification.h:3:
In file included from ./algebra.h:3:
In file included from ./random.h:3:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/optional:152:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/functional:504:
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'fasttreeid::Lambda' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3296:9: note: in instantiation of member function 'std::__shared_ptr_emplace<fasttreeid::Lambda, std::allocator<fasttreeid::Lambda>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a, _Args&& ...__args)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<fasttreeid::Lambda, std::allocator<fasttreeid::Lambda>>::__shared_ptr_emplace<std::shared_ptr<fasttreeid::RandomTool> &, const unsigned long &, unsigned long &>' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
identification.cpp:542:37: note: in instantiation of function template specialization 'std::make_shared<fasttreeid::Lambda, std::shared_ptr<fasttreeid::RandomTool> &, const unsigned long &, unsigned long &>' requested here
lambda[directed[i - 1]][i] = std::make_shared<Lambda>(randomTool, directed[i - 1], i);
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'fasttreeid::Omega' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3296:9: note: in instantiation of member function 'std::__shared_ptr_emplace<fasttreeid::Omega, std::allocator<fasttreeid::Omega>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a, _Args&& ...__args)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<fasttreeid::Omega, std::allocator<fasttreeid::Omega>>::__shared_ptr_emplace<std::shared_ptr<fasttreeid::RandomTool> &, unsigned long &, unsigned long &>' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
identification.cpp:545:22: note: in instantiation of function template specialization 'std::make_shared<fasttreeid::Omega, std::shared_ptr<fasttreeid::RandomTool> &, unsigned long &, unsigned long &>' requested here
omega[u][v] = std::make_shared<Omega>(randomTool, u, v);
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:5: warning: destructor called on non-final 'fasttreeid::Sigma' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
__data_.second().~_Tp();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3296:9: note: in instantiation of member function 'std::__shared_ptr_emplace<fasttreeid::Sigma, std::allocator<fasttreeid::Sigma>>::__on_zero_shared' requested here
__shared_ptr_emplace(_Alloc __a, _Args&& ...__args)
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:4038:26: note: in instantiation of function template specialization 'std::__shared_ptr_emplace<fasttreeid::Sigma, std::allocator<fasttreeid::Sigma>>::__shared_ptr_emplace<unsigned long &, unsigned long &>' requested here
::new(__hold2.get()) _CntrlBlk(__a2, _VSTD::forward<_Args>(__args)...);
^
identification.cpp:553:23: note: in instantiation of function template specialization 'std::make_shared<fasttreeid::Sigma, unsigned long &, unsigned long &>' requested here
sigma[i][j] = std::make_shared<Sigma>(i, j);
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:3318:23: note: qualify call to silence this warning
__data_.second().~_Tp();
^
3 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o fasttreeid.so RcppExports.o algebra.o identification.o random.o rbridge.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/fasttreeid.Rcheck/00LOCK-fasttreeid/00new/fasttreeid/libs
** generating debug symbols (dSYM)
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fasttreeid)