* installing *source* package ‘fastei’ ... ** package ‘fastei’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’ using SDK: ‘MacOSX11.3.sdk’ clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c LP.c -o LP.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c MCMC.c -o MCMC.o clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c bootstrap.c -o bootstrap.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dynamic_program.c -o dynamic_program.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c exact.c -o exact.o LP.c:45:20: warning: unused function 'row_copy' [-Wunused-function] static inline void row_copy(int n, const double *src, double *dst) ^ bootstrap.c:132:9: warning: unused variable 'samples' [-Wunused-variable] int samples = bdim * bootiter; ^ bootstrap.c:133:9: warning: unused variable 'matsize' [-Wunused-variable] int matsize = wmat->cols * xmat->rows; ^ exact.c:224:10: warning: unused variable 'HSETS' [-Wunused-variable] Set *HSETS = ctx->hset; ^ exact.c:268:10: warning: unused variable 'KSETS' [-Wunused-variable] Set *KSETS = ctx->kset; ^ MCMC.c:182:14: warning: unused variable 'arraySize' [-Wunused-variable] uint32_t arraySize = M * S; ^ bootstrap.c:251:9: warning: unused variable 'matsize' [-Wunused-variable] int matsize = xmat->rows; ^ exact.c:414:10: warning: unused variable 'KSETS' [-Wunused-variable] Set *KSETS = ctx->kset; ^ exact.c:415:10: warning: unused variable 'HSETS' [-Wunused-variable] Set *HSETS = ctx->hset; ^ exact.c:584:13: warning: unused variable 'W' [-Wunused-variable] Matrix *W = &ctx->W; ^ MCMC.c:361:13: warning: unused variable 'W' [-Wunused-variable] Matrix *W = &ctx->W; // Get the W matrix ^ MCMC.c:497:20: warning: unused variable 'qsum' [-Wunused-variable] double qsum = 0; ^ MCMC.c:483:13: warning: unused variable 'W' [-Wunused-variable] Matrix *W = &ctx->W; // Get the W matrix ^ MCMC.c:488:12: warning: variable 'borrar' set but not used [-Wunused-but-set-variable] double borrar = 0; ^ MCMC.c:489:12: warning: variable 'borrar2' set but not used [-Wunused-but-set-variable] double borrar2 = 0; ^ MCMC.c:550:27: warning: unused variable 'currentMatrix' [-Wunused-variable] IntMatrix currentMatrix = currentSet->data[s]; // Z ^ MCMC.c:518:13: warning: unused variable 'X' [-Wunused-variable] Matrix *X = &ctx->X; ^ MCMC.c:520:16: warning: unused variable 'intX' [-Wunused-variable] IntMatrix *intX = &ctx->intX; ^ MCMC.c:521:16: warning: unused variable 'intW' [-Wunused-variable] IntMatrix *intW = &ctx->intW; ^ MCMC.c:523:13: warning: unused variable 'probabilities' [-Wunused-variable] Matrix *probabilities = &ctx->probabilities; ^ 3 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c main.c -o main.o 5 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c multinomial.c -o multinomial.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c multivariate-cdf.c -o multivariate-cdf.o multinomial.c:107:13: warning: unused variable 'X' [-Wunused-variable] Matrix *X = &ctx->X; ^ multinomial.c:108:13: warning: unused variable 'W' [-Wunused-variable] Matrix *W = &ctx->W; ^ multinomial.c:110:16: warning: unused variable 'intW' [-Wunused-variable] IntMatrix *intW = &ctx->intW; ^ main.c:497:25: warning: variable 'status' set but not used [-Wunused-but-set-variable] int status; ^ main.c:634:50: warning: '&&' within '||' [-Wlogical-op-parentheses] if (i >= 1 && i >= config.params.miniter && ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~ main.c:634:50: note: place parentheses around the '&&' expression to silence this warning if (i >= 1 && i >= config.params.miniter && ^ ( 3 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c multivariate-pdf.c -o multivariate-pdf.o 1 warning generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c utils_hash.c -o utils_hash.o clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c utils_matrix.c -o utils_matrix.o 11 warnings generated. clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c utils_multivariate.c -o utils_multivariate.o utils_matrix.c:62:13: warning: unused function 'transposeMatrix' [-Wunused-function] static void transposeMatrix(const double *src, int rows, int cols, double *dst) ^ utils_multivariate.c:230:10: warning: unused variable 'trans' [-Wunused-variable] char trans = 'N'; // (There's no separate transpose flag in dger, ^ clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.4/Rcpp/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c wrapper.cpp -o wrapper.o 1 warning generated. 2 warnings generated. 1 warning generated. clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o fastei.so LP.o MCMC.o RcppExports.o bootstrap.o dynamic_program.o exact.o main.o multinomial.o multivariate-cdf.o multivariate-pdf.o utils_hash.o utils_matrix.o utils_multivariate.o wrapper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.4/fastei.Rcheck/00LOCK-fastei/00new/fastei/libs ** generating debug symbols (dSYM) ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fastei)