• using R version 4.4.1 (2024-06-14)
  • using platform: x86_64-apple-darwin20
  • R was compiled by     Apple clang version 14.0.0 (clang-1400.0.29.202)     GNU Fortran (GCC) 12.2.0
  • running under: macOS Ventura 13.3.1
  • using session charset: UTF-8
  • checking for file ‘emuR/DESCRIPTION’ ... OK
  • this is package ‘emuR’ version ‘2.5.2’
  • package encoding: UTF-8
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘emuR’ can be installed ... [14s/22s] OK See the install log for details.
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking code files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... [1s/1s] OK
  • checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
  • checking whether the package can be unloaded cleanly ... [1s/1s] OK
  • checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
  • checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
  • checking loading without being on the library search path ... [1s/1s] OK
  • checking whether startup messages can be suppressed ... [1s/1s] OK
  • checking dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... [21s/37s] OK
  • checking Rd files ... [1s/2s] OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... [0s/0s] OK
  • checking LazyData ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking examples ... [5s/8s] OK
  • checking for unstated dependencies in ‘tests’ ... OK
  • checking tests ... [70s/116s] ERROR   Running ‘testthat.R’ [69s/116s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > test_check("emuR")   Loading required package: emuR      Attaching package: 'emuR'      The following object is masked from 'package:base':          norm      [1] "INFO: No bundleList dir found in emuDB (path: /Volumes/Temp/tmp/RtmpJBU0Y0/emuR_testthat/ae_emuDB/bundleLists)! Creating directory..."        INFO: parsing 14 fms segments/events        |     | | 0%     |     |===== | 7%     |     |========== | 14%     |     |=============== | 21%     |     |==================== | 29%     |     |========================= | 36%     |     |============================== | 43%     |     |=================================== | 50%     |     |======================================== | 57%     |     |============================================= | 64%     |     |================================================== | 71%     |     |======================================================= | 79%     |     |============================================================ | 86%     |     |================================================================= | 93%     |     |======================================================================| 100%        INFO: parsing 14 fms segments/events        |     | | 0%     |     |===== | 7%     |     |========== | 14%     |     |=============== | 21%     |     |==================== | 29%     |     |========================= | 36%     |     |============================== | 43%     |     |=================================== | 50%     |     |======================================== | 57%     |     |============================================= | 64%     |     |================================================== | 71%     |     |======================================================= | 79%     |     |============================================================ | 86%     |     |================================================================= | 93%     |     |======================================================================| 100%   Read 16 items   Read 12 records   Read 24 items   Read 20 records   [ FAIL 8 | WARN 0 | SKIP 38 | PASS 830 ]      ══ Skipped tests (38) ══════════════════════════════════════════════════════════   • On CRAN (7): 'test_emuR-autobuild.R:19:3', 'test_emuR-database.R:643:3',     'test_emuR-database.R:717:3', 'test_emuR-query.database.R:378:5',     'test_emuR-query.database.R:631:5', 'test_emuR-query.database.R:643:5',     'test_emuR-query.database.R:650:5'   • empty test (29): 'test_emuR-autoproc_annots.R:13:1',     'test_emuR-autoproc_annots.R:53:1',     'test_emuR-convert_BPFCollection.R:516:1',     'test_emuR-convert_TextGridCollection.R:38:1',     'test_emuR-convert_TextGridCollection.R:124:1',     'test_emuR-database.DBconfig.EMUwebAppConfig.R:49:3',     'test_emuR-database.DBconfig.EMUwebAppConfig.R:19:1',     'test_emuR-database.DBconfig.EMUwebAppConfig.R:98:3',     'test_emuR-database.DBconfig.EMUwebAppConfig.R:102:3',     'test_emuR-database.DBconfig.EMUwebAppConfig.R:69:1',     'test_emuR-database.DBconfig.EMUwebAppConfig.R:147:3',     'test_emuR-database.DBconfig.EMUwebAppConfig.R:151:3',     'test_emuR-database.DBconfig.EMUwebAppConfig.R:113:1',     'test_emuR-database.DBconfig.R:45:1', 'test_emuR-database.DBconfig.R:148:1',     'test_emuR-database.DBconfig.R:239:1', 'test_emuR-database.DBconfig.R:299:1',     'test_emuR-database.DBconfig.R:353:1', 'test_emuR-database.DBconfig.R:424:1',     'test_emuR-database.DBconfig.R:524:3', 'test_emuR-database.DBconfig.R:512:1',     'test_emuR-database.R:20:1', 'test_emuR-database.caching.R:22:1',     'test_emuR-database.files.R:55:3', 'test_emuR-database.files.R:9:1',     'test_emuR-emuRsegs.R:18:1', 'test_emuR-emuRtrackdata.R:17:1',     'test_emuR-export_TextGridCollection.R:17:1',     'test_emuR-query.database.R:17:1'   • skipping as it takes 4 ever to test -> make sure to rerun on deploy (2):     'test_emuR-bas_webservices.R:12:13', 'test_emuR-bas_webservices.R:30:5'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_emuR-database.DBconfig.R:67:5'): add = (C)RUD ──────────────────   Error: vector memory limit of 16.0 Gb reached, see mem.maxVSize()   Backtrace:        ▆     1. ├─emuR::add_ssffTrackDefinition(...) at test_emuR-database.DBconfig.R:67:5     2. │ └─emuR::list_files(emuDBhandle, fileExtension)     3. │ └─... %>% ...     4. ├─dplyr::mutate(...)     5. ├─dplyr::filter(., stringr::str_detect(.data$bundle, bundlePattern))     6. ├─dplyr::filter(., stringr::str_detect(.data$session, sessionPattern))     7. ├─dplyr::mutate(., bundle = stringr::str_remove(.data$bundle, "_bndl$"))     8. ├─dplyr::mutate(...)     9. ├─dplyr::filter(., endsWith(.data$bundle, "_bndl"))    10. ├─dplyr::filter(., endsWith(.data$session, "_ses"))    11. ├─dplyr::filter(., !is.na(.data$file))    12. ├─dplyr::filter(., !is.na(.data$bundle))    13. ├─dplyr::filter(., !is.na(.data$session))    14. ├─tidyr::separate(...)    15. └─tidyr:::separate.data.frame(...)    16. └─tidyr:::str_separate(...)    17. └─tidyr:::str_split_fixed(...)    18. └─tidyr:::simplifyPieces(pieces, n, fill == "left")   ── Failure ('test_emuR-database.DBconfig.R:84:5'): list = C(R)UD ───────────────   df$name not equal to c("dft", "fm", "newTrackName").   Lengths differ: 2 is not 3   ── Failure ('test_emuR-database.DBconfig.R:85:5'): list = C(R)UD ───────────────   df$columnName not equal to c("dft", "fm", "pitch").   Lengths differ: 2 is not 3   ── Failure ('test_emuR-database.DBconfig.R:86:5'): list = C(R)UD ───────────────   df$fileExtension not equal to c("dft", "fms", "pit").   Lengths differ: 2 is not 3   ── Error ('test_emuR-database.DBconfig.R:93:5'): remove = CRU(D) ───────────────   Error in `remove_ssffTrackDefinition(ae, name = "newTrackName", deleteFiles = TRUE)`: No ssffTrackDefinitions found with name: 'newTrackName'   Backtrace:       ▆    1. └─emuR::remove_ssffTrackDefinition(ae, name = "newTrackName", deleteFiles = TRUE) at test_emuR-database.DBconfig.R:93:5   ── Error ('test_emuR-database.R:693:3'): rename bundles works correctly ────────   Error: vector memory limit of 16.0 Gb reached, see mem.maxVSize()   Backtrace:        ▆     1. ├─emuR::rename_bundles(db, bundles) at test_emuR-database.R:693:3     2. │ └─emuR::list_files(...)     3. │ └─... %>% ...     4. ├─dplyr::mutate(...)     5. ├─dplyr::filter(., stringr::str_detect(.data$bundle, bundlePattern))     6. ├─dplyr::filter(., stringr::str_detect(.data$session, sessionPattern))     7. ├─dplyr::mutate(., bundle = stringr::str_remove(.data$bundle, "_bndl$"))     8. ├─dplyr::mutate(...)     9. ├─dplyr::filter(., endsWith(.data$bundle, "_bndl"))    10. ├─dplyr::filter(., endsWith(.data$session, "_ses"))    11. ├─dplyr::filter(., !is.na(.data$file))    12. ├─dplyr::filter(., !is.na(.data$bundle))    13. ├─dplyr::filter(., !is.na(.data$session))    14. ├─tidyr::separate(...)    15. └─tidyr:::separate.data.frame(...)    16. └─tidyr:::str_separate(...)    17. └─tidyr:::str_split_fixed(...)    18. └─tidyr:::simplifyPieces(pieces, n, fill == "left")   ── Error ('test_emuR-database.files.R:87:7'): list = C(R)UD ────────────────────   Error: vector memory limit of 16.0 Gb reached, see mem.maxVSize()   Backtrace:        ▆     1. ├─emuR::list_files(ae) at test_emuR-database.files.R:87:7     2. │ └─... %>% ...     3. ├─dplyr::mutate(...)     4. ├─dplyr::filter(., stringr::str_detect(.data$bundle, bundlePattern))     5. ├─dplyr::filter(., stringr::str_detect(.data$session, sessionPattern))     6. ├─dplyr::mutate(., bundle = stringr::str_remove(.data$bundle, "_bndl$"))     7. ├─dplyr::mutate(...)     8. ├─dplyr::filter(., endsWith(.data$bundle, "_bndl"))     9. ├─dplyr::filter(., endsWith(.data$session, "_ses"))    10. ├─dplyr::filter(., !is.na(.data$file))    11. ├─dplyr::filter(., !is.na(.data$bundle))    12. ├─dplyr::filter(., !is.na(.data$session))    13. ├─tidyr::separate(...)    14. └─tidyr:::separate.data.frame(...)    15. └─tidyr:::str_separate(...)    16. └─tidyr:::str_split_fixed(...)    17. └─tidyr:::simplifyPieces(pieces, n, fill == "left")   ── Error ('test_emuR-get_trackdata.R:257:3'): non wrassp functions work ────────   Error: vector memory limit of 16.0 Gb reached, see mem.maxVSize()   Backtrace:        ▆     1. ├─emuR::list_files(ae, fileExtension = "fms") at test_emuR-get_trackdata.R:257:3     2. │ └─... %>% ...     3. ├─dplyr::mutate(...)     4. ├─dplyr::filter(., stringr::str_detect(.data$bundle, bundlePattern))     5. ├─dplyr::filter(., stringr::str_detect(.data$session, sessionPattern))     6. ├─dplyr::mutate(., bundle = stringr::str_remove(.data$bundle, "_bndl$"))     7. ├─dplyr::mutate(...)     8. ├─dplyr::filter(., endsWith(.data$bundle, "_bndl"))     9. ├─dplyr::filter(., endsWith(.data$session, "_ses"))    10. ├─dplyr::filter(., !is.na(.data$file))    11. ├─dplyr::filter(., !is.na(.data$bundle))    12. ├─dplyr::filter(., !is.na(.data$session))    13. ├─tidyr::separate(...)    14. └─tidyr:::separate.data.frame(...)    15. └─tidyr:::str_separate(...)    16. └─tidyr:::str_split_fixed(...)    17. └─tidyr:::simplifyPieces(pieces, n, fill == "left")      [ FAIL 8 | WARN 0 | SKIP 38 | PASS 830 ]   Error: Test failures   In addition: Warning message:   call dbDisconnect() when finished working with a connection   Execution halted
  • checking PDF version of manual ... [12s/20s] OK
  • DONE Status: 1 ERROR
  • using check arguments '--no-clean-on-error '