Check results for 'emuR'

using R version 4.4.1 (2024-06-14)
using platform: x86_64-apple-darwin20
R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0
running under: macOS Ventura 13.3.1
using session charset: UTF-8
checking for file ‘emuR/DESCRIPTION’ ... OK
this is package ‘emuR’ version ‘2.5.2’
package encoding: UTF-8
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘emuR’ can be installed ... [16s/39s] OK See the install log for details.
checking installed package size ... OK
checking package directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [1s/2s] OK
checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
checking whether the package can be unloaded cleanly ... [1s/1s] OK
checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
checking loading without being on the library search path ... [1s/2s] OK
checking whether startup messages can be suppressed ... [1s/1s] OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [26s/52s] OK
checking Rd files ... [2s/4s] OK
checking Rd metadata ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking contents of ‘data’ directory ... OK
checking data for non-ASCII characters ... [0s/1s] OK
checking LazyData ... OK
checking data for ASCII and uncompressed saves ... OK
checking examples ... [6s/11s] OK
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [85s/199s] ERROR Running ‘testthat.R’ [85s/198s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > test_check("emuR") Loading required package: emuR Attaching package: 'emuR' The following object is masked from 'package:base': norm [1] "INFO: No bundleList dir found in emuDB (path: /Volumes/Temp/tmp/RtmpzbYhAt/emuR_testthat/ae_emuDB/bundleLists)! Creating directory..." Saving _problems/test_emuR-database.DBconfig-73.R Saving _problems/test_emuR-database.DBconfig-84.R Saving _problems/test_emuR-database.DBconfig-85.R Saving _problems/test_emuR-database.DBconfig-86.R Saving _problems/test_emuR-database.DBconfig-95.R Saving _problems/test_emuR-database-693.R Saving _problems/test_emuR-database.files-87.R INFO: parsing 14 fms segments/events | | | 0% | |===== | 7% | |========== | 14% | |=============== | 21% | |==================== | 29% | |========================= | 36% | |============================== | 43% | |=================================== | 50% | |======================================== | 57% | |============================================= | 64% | |================================================== | 71% | |======================================================= | 79% | |============================================================ | 86% | |================================================================= | 93% | |======================================================================| 100% INFO: parsing 14 fms segments/events | | | 0% | |===== | 7% | |========== | 14% | |=============== | 21% | |==================== | 29% | |========================= | 36% | |============================== | 43% | |=================================== | 50% | |======================================== | 57% | |============================================= | 64% | |================================================== | 71% | |======================================================= | 79% | |============================================================ | 86% | |================================================================= | 93% | |======================================================================| 100% Read 16 items Read 12 records Read 24 items Read 20 records Saving _problems/test_emuR-get_trackdata-257.R [ FAIL 8 | WARN 0 | SKIP 19 | PASS 830 ] ══ Skipped tests (19) ══════════════════════════════════════════════════════════ • On CRAN (7): 'test_emuR-autobuild.R:19:3', 'test_emuR-database.R:643:3', 'test_emuR-database.R:717:3', 'test_emuR-query.database.R:378:5', 'test_emuR-query.database.R:631:5', 'test_emuR-query.database.R:643:5', 'test_emuR-query.database.R:650:5' • empty test (10): , 'test_emuR-convert_BPFCollection.R:516:1', 'test_emuR-database.DBconfig.EMUwebAppConfig.R:49:3', 'test_emuR-database.DBconfig.EMUwebAppConfig.R:98:3', 'test_emuR-database.DBconfig.EMUwebAppConfig.R:102:3', 'test_emuR-database.DBconfig.EMUwebAppConfig.R:147:3', 'test_emuR-database.DBconfig.EMUwebAppConfig.R:151:3', 'test_emuR-database.DBconfig.R:524:3', 'test_emuR-query.database.R:17:1', • skipping as it takes 4 ever to test -> make sure to rerun on deploy (2): 'test_emuR-bas_webservices.R:12:13', 'test_emuR-bas_webservices.R:30:5' ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test_emuR-database.DBconfig.R:67:5'): CRUD operations work for ssffTrackDefinitions / add = (C)RUD ── Error: vector memory limit of 16.0 Gb reached, see mem.maxVSize() Backtrace: ▆ 1. ├─emuR::add_ssffTrackDefinition(...) at test_emuR-database.DBconfig.R:67:5 2. │ └─emuR::list_files(emuDBhandle, fileExtension) 3. │ └─... %>% ... 4. ├─dplyr::mutate(...) 5. ├─dplyr::filter(., stringr::str_detect(.data$bundle, bundlePattern)) 6. ├─dplyr::filter(., stringr::str_detect(.data$session, sessionPattern)) 7. ├─dplyr::mutate(., bundle = stringr::str_remove(.data$bundle, "_bndl$")) 8. ├─dplyr::mutate(...) 9. ├─dplyr::filter(., endsWith(.data$bundle, "_bndl")) 10. ├─dplyr::filter(., endsWith(.data$session, "_ses")) 11. ├─dplyr::filter(., !is.na(.data$file)) 12. ├─dplyr::filter(., !is.na(.data$bundle)) 13. ├─dplyr::filter(., !is.na(.data$session)) 14. ├─tidyr::separate(...) 15. └─tidyr:::separate.data.frame(...) 16. └─tidyr:::str_separate(...) 17. └─tidyr:::str_split_fixed(...) 18. └─tidyr:::simplifyPieces(pieces, n, fill == "left") ── Failure ('test_emuR-database.DBconfig.R:84:5'): CRUD operations work for ssffTrackDefinitions / list = C(R)UD ── Expected `df$name` to equal `c("dft", "fm", "newTrackName")`. Differences: Lengths differ: 2 is not 3 ── Failure ('test_emuR-database.DBconfig.R:85:5'): CRUD operations work for ssffTrackDefinitions / list = C(R)UD ── Expected `df$columnName` to equal `c("dft", "fm", "pitch")`. Differences: Lengths differ: 2 is not 3 ── Failure ('test_emuR-database.DBconfig.R:86:5'): CRUD operations work for ssffTrackDefinitions / list = C(R)UD ── Expected `df$fileExtension` to equal `c("dft", "fms", "pit")`. Differences: Lengths differ: 2 is not 3 ── Error ('test_emuR-database.DBconfig.R:93:5'): CRUD operations work for ssffTrackDefinitions / remove = CRU(D) ── Error in `remove_ssffTrackDefinition(ae, name = "newTrackName", deleteFiles = TRUE)`: No ssffTrackDefinitions found with name: 'newTrackName' Backtrace: ▆ 1. └─emuR::remove_ssffTrackDefinition(ae, name = "newTrackName", deleteFiles = TRUE) at test_emuR-database.DBconfig.R:93:5 ── Error ('test_emuR-database.R:693:3'): rename bundles works correctly ──────── Error: vector memory limit of 16.0 Gb reached, see mem.maxVSize() Backtrace: ▆ 1. ├─emuR::rename_bundles(db, bundles) at test_emuR-database.R:693:3 2. │ └─emuR::list_files(...) 3. │ └─... %>% ... 4. ├─dplyr::mutate(...) 5. ├─dplyr::filter(., stringr::str_detect(.data$bundle, bundlePattern)) 6. ├─dplyr::filter(., stringr::str_detect(.data$session, sessionPattern)) 7. ├─dplyr::mutate(., bundle = stringr::str_remove(.data$bundle, "_bndl$")) 8. ├─dplyr::mutate(...) 9. ├─dplyr::filter(., endsWith(.data$bundle, "_bndl")) 10. ├─dplyr::filter(., endsWith(.data$session, "_ses")) 11. ├─dplyr::filter(., !is.na(.data$file)) 12. ├─dplyr::filter(., !is.na(.data$bundle)) 13. ├─dplyr::filter(., !is.na(.data$session)) 14. ├─tidyr::separate(...) 15. └─tidyr:::separate.data.frame(...) 16. └─tidyr:::str_separate(...) 17. └─tidyr:::str_split_fixed(...) 18. └─tidyr:::simplifyPieces(pieces, n, fill == "left") ── Error ('test_emuR-database.files.R:87:7'): file operations work / CRUD operations for files work / list = C(R)UD ── Error: vector memory limit of 16.0 Gb reached, see mem.maxVSize() Backtrace: ▆ 1. ├─emuR::list_files(ae) at test_emuR-database.files.R:87:7 2. │ └─... %>% ... 3. ├─dplyr::mutate(...) 4. ├─dplyr::filter(., stringr::str_detect(.data$bundle, bundlePattern)) 5. ├─dplyr::filter(., stringr::str_detect(.data$session, sessionPattern)) 6. ├─dplyr::mutate(., bundle = stringr::str_remove(.data$bundle, "_bndl$")) 7. ├─dplyr::mutate(...) 8. ├─dplyr::filter(., endsWith(.data$bundle, "_bndl")) 9. ├─dplyr::filter(., endsWith(.data$session, "_ses")) 10. ├─dplyr::filter(., !is.na(.data$file)) 11. ├─dplyr::filter(., !is.na(.data$bundle)) 12. ├─dplyr::filter(., !is.na(.data$session)) 13. ├─tidyr::separate(...) 14. └─tidyr:::separate.data.frame(...) 15. └─tidyr:::str_separate(...) 16. └─tidyr:::str_split_fixed(...) 17. └─tidyr:::simplifyPieces(pieces, n, fill == "left") ── Error ('test_emuR-get_trackdata.R:257:3'): non wrassp functions work ──────── Error: vector memory limit of 16.0 Gb reached, see mem.maxVSize() Backtrace: ▆ 1. ├─emuR::list_files(ae, fileExtension = "fms") at test_emuR-get_trackdata.R:257:3 2. │ └─... %>% ... 3. ├─dplyr::mutate(...) 4. ├─dplyr::filter(., stringr::str_detect(.data$bundle, bundlePattern)) 5. ├─dplyr::filter(., stringr::str_detect(.data$session, sessionPattern)) 6. ├─dplyr::mutate(., bundle = stringr::str_remove(.data$bundle, "_bndl$")) 7. ├─dplyr::mutate(...) 8. ├─dplyr::filter(., endsWith(.data$bundle, "_bndl")) 9. ├─dplyr::filter(., endsWith(.data$session, "_ses")) 10. ├─dplyr::filter(., !is.na(.data$file)) 11. ├─dplyr::filter(., !is.na(.data$bundle)) 12. ├─dplyr::filter(., !is.na(.data$session)) 13. ├─tidyr::separate(...) 14. └─tidyr:::separate.data.frame(...) 15. └─tidyr:::str_separate(...) 16. └─tidyr:::str_split_fixed(...) 17. └─tidyr:::simplifyPieces(pieces, n, fill == "left") [ FAIL 8 | WARN 0 | SKIP 19 | PASS 830 ] Error: ! Test failures. Warning message: call dbDisconnect() when finished working with a connection Execution halted
checking PDF version of manual ... [13s/29s] OK
DONE Status: 1 ERROR
using check arguments '--no-clean-on-error '