* installing *source* package ‘dynsurv’ ...
** package ‘dynsurv’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DBOOST_NO_AUTO_PTR -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include' -I/opt/R/x86_64/include -I. -fPIC -falign-functions=64 -Wall -g -O2 -c IntRegPar.cpp -o IntRegPar.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DBOOST_NO_AUTO_PTR -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c arms.c -o arms.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DBOOST_NO_AUTO_PTR -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include' -I/opt/R/x86_64/include -I. -fPIC -falign-functions=64 -Wall -g -O2 -c bayesCox.cpp -o bayesCox.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DNDEBUG -DBOOST_NO_AUTO_PTR -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c dynsurv_init.c -o dynsurv_init.o
In file included from IntRegPar.cpp:10:
In file included from ./IntRegPar.h:15:
In file included from ./ublas.h:14:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/numeric/ublas/vector.hpp:20:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/config.hpp:48:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined]
# define BOOST_NO_AUTO_PTR
^
<command line>:3:9: note: previous definition is here
#define BOOST_NO_AUTO_PTR 1
^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:16:
In file included from ./IntRegPar.h:15:
In file included from ./ublas.h:14:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/numeric/ublas/vector.hpp:20:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/config.hpp:48:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/config/stdlib/libcpp.hpp:98:11: warning: 'BOOST_NO_AUTO_PTR' macro redefined [-Wmacro-redefined]
# define BOOST_NO_AUTO_PTR
^
<command line>:3:9: note: previous definition is here
#define BOOST_NO_AUTO_PTR 1
^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
./TimeIndepModel.h:65:7: warning: variable 'err' set but not used [-Wunused-but-set-variable]
int err;
^
In file included from bayesCox.cpp:4:
In file included from ./TimeVaryingCoxModel.h:17:
./TimeVaryingModel.h:85:7: warning: variable 'err' set but not used [-Wunused-but-set-variable]
int err;
^
./TimeVaryingModel.h:162:7: warning: variable 'err' set but not used [-Wunused-but-set-variable]
int err;
^
In file included from bayesCox.cpp:5:
In file included from ./DynamicCoxModel.h:17:
./DynamicModel.h:355:11: warning: variable 'err' set but not used [-Wunused-but-set-variable]
int err;
^
./DynamicModel.h:452:11: warning: variable 'err' set but not used [-Wunused-but-set-variable]
int err;
^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/core/checked_delete.hpp:36:5: warning: delete called on non-final 'ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
delete x;
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>>>' requested here
boost::checked_delete( p );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:279:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>>>' requested here
boost::detail::shared_count( p ).swap( pn );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:373:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>>, ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>>>' requested here
boost::detail::sp_pointer_construct( this, p, pn );
^
bayesCox.cpp:48:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>>>::shared_ptr<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>>>' requested here
boost::shared_ptr<M> pm(new M(pd));
^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:15:
In file included from ./IntRegPrior.h:14:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/iostream:37:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/ios:215:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__locale:14:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/string:506:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/string_view:175:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__string:57:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/algorithm:643:
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1686:86: warning: destructor called on non-final 'ir::TimeIndepCoxPar' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
_LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_INLINE_VISIBILITY void destroy(pointer __p) {__p->~_Tp();}
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1578:21: note: in instantiation of member function 'std::allocator<ir::TimeIndepCoxPar>::destroy' requested here
__a.destroy(__p);
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1419:14: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<ir::TimeIndepCoxPar>>::__destroy<ir::TimeIndepCoxPar>' requested here
{__destroy(__has_destroy<allocator_type, _Tp*>(), __a, __p);}
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/vector:428:25: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<ir::TimeIndepCoxPar>>::destroy<ir::TimeIndepCoxPar>' requested here
__alloc_traits::destroy(__alloc(), _VSTD::__to_address(--__soon_to_be_end));
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/vector:371:29: note: in instantiation of member function 'std::__vector_base<ir::TimeIndepCoxPar, std::allocator<ir::TimeIndepCoxPar>>::__destruct_at_end' requested here
void clear() _NOEXCEPT {__destruct_at_end(__begin_);}
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/vector:465:9: note: in instantiation of member function 'std::__vector_base<ir::TimeIndepCoxPar, std::allocator<ir::TimeIndepCoxPar>>::clear' requested here
clear();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/vector:497:5: note: in instantiation of member function 'std::__vector_base<ir::TimeIndepCoxPar, std::allocator<ir::TimeIndepCoxPar>>::~__vector_base' requested here
vector() _NOEXCEPT_(is_nothrow_default_constructible<allocator_type>::value)
^
./GibbsSampler.h:40:3: note: in instantiation of member function 'std::vector<ir::TimeIndepCoxPar>::vector' requested here
GibbsSampler(const boost::shared_ptr<M>& pm,
^
bayesCox.cpp:50:23: note: in instantiation of member function 'ir::GibbsSampler<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalPrior>>>::GibbsSampler' requested here
GibbsSampler<M> gs(pm, p_iter[0]);
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1686:92: note: qualify call to silence this warning
_LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_INLINE_VISIBILITY void destroy(pointer __p) {__p->~_Tp();}
^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/core/checked_delete.hpp:36:5: warning: delete called on non-final 'ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
delete x;
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior>>>' requested here
boost::checked_delete( p );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:279:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior>>>' requested here
boost::detail::shared_count( p ).swap( pn );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:373:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior>>, ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior>>>' requested here
boost::detail::sp_pointer_construct( this, p, pn );
^
bayesCox.cpp:76:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior>>>::shared_ptr<ir::TimeIndepCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalPrior>>>' requested here
boost::shared_ptr<M> pm(new M(pd));
^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/core/checked_delete.hpp:36:5: warning: delete called on non-final 'ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
delete x;
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>' requested here
boost::checked_delete( p );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:279:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>' requested here
boost::detail::shared_count( p ).swap( pn );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:373:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>, ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>' requested here
boost::detail::sp_pointer_construct( this, p, pn );
^
bayesCox.cpp:104:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>::shared_ptr<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>' requested here
boost::shared_ptr<M> pm(new M(pd));
^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:15:
In file included from ./IntRegPrior.h:14:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/iostream:37:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/ios:215:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__locale:14:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/string:506:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/string_view:175:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__string:57:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/algorithm:643:
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1686:86: warning: destructor called on non-final 'ir::TimeVaryingCoxPar' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
_LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_INLINE_VISIBILITY void destroy(pointer __p) {__p->~_Tp();}
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1578:21: note: in instantiation of member function 'std::allocator<ir::TimeVaryingCoxPar>::destroy' requested here
__a.destroy(__p);
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1419:14: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<ir::TimeVaryingCoxPar>>::__destroy<ir::TimeVaryingCoxPar>' requested here
{__destroy(__has_destroy<allocator_type, _Tp*>(), __a, __p);}
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/vector:428:25: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<ir::TimeVaryingCoxPar>>::destroy<ir::TimeVaryingCoxPar>' requested here
__alloc_traits::destroy(__alloc(), _VSTD::__to_address(--__soon_to_be_end));
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/vector:371:29: note: in instantiation of member function 'std::__vector_base<ir::TimeVaryingCoxPar, std::allocator<ir::TimeVaryingCoxPar>>::__destruct_at_end' requested here
void clear() _NOEXCEPT {__destruct_at_end(__begin_);}
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/vector:465:9: note: in instantiation of member function 'std::__vector_base<ir::TimeVaryingCoxPar, std::allocator<ir::TimeVaryingCoxPar>>::clear' requested here
clear();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/vector:497:5: note: in instantiation of member function 'std::__vector_base<ir::TimeVaryingCoxPar, std::allocator<ir::TimeVaryingCoxPar>>::~__vector_base' requested here
vector() _NOEXCEPT_(is_nothrow_default_constructible<allocator_type>::value)
^
./GibbsSampler.h:40:3: note: in instantiation of member function 'std::vector<ir::TimeVaryingCoxPar>::vector' requested here
GibbsSampler(const boost::shared_ptr<M>& pm,
^
bayesCox.cpp:107:23: note: in instantiation of member function 'ir::GibbsSampler<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>::GibbsSampler' requested here
GibbsSampler<M> gs(pm, p_iter[0]);
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1686:92: note: qualify call to silence this warning
_LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_INLINE_VISIBILITY void destroy(pointer __p) {__p->~_Tp();}
^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/core/checked_delete.hpp:36:5: warning: delete called on non-final 'ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
delete x;
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>>' requested here
boost::checked_delete( p );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:279:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>>' requested here
boost::detail::shared_count( p ).swap( pn );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:373:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>, ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>>' requested here
boost::detail::sp_pointer_construct( this, p, pn );
^
bayesCox.cpp:133:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>>::shared_ptr<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>>' requested here
boost::shared_ptr<M> pm(new M(pd));
^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/core/checked_delete.hpp:36:5: warning: delete called on non-final 'ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
delete x;
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>>' requested here
boost::checked_delete( p );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:279:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>>' requested here
boost::detail::shared_count( p ).swap( pn );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:373:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>, ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>>' requested here
boost::detail::sp_pointer_construct( this, p, pn );
^
bayesCox.cpp:164:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>>::shared_ptr<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>>' requested here
boost::shared_ptr<M> pm(new M(pd));
^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/core/checked_delete.hpp:36:5: warning: delete called on non-final 'ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
delete x;
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>>' requested here
boost::checked_delete( p );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:279:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>>' requested here
boost::detail::shared_count( p ).swap( pn );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:373:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>, ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>>' requested here
boost::detail::sp_pointer_construct( this, p, pn );
^
bayesCox.cpp:193:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>>::shared_ptr<ir::TimeVaryingCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>>' requested here
boost::shared_ptr<M> pm(new M(pd));
^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/core/checked_delete.hpp:36:5: warning: delete called on non-final 'ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
delete x;
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>' requested here
boost::checked_delete( p );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:279:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>' requested here
boost::detail::shared_count( p ).swap( pn );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:373:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>, ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>' requested here
boost::detail::sp_pointer_construct( this, p, pn );
^
bayesCox.cpp:224:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>::shared_ptr<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>' requested here
boost::shared_ptr<M> pm(new M(pd));
^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:15:
In file included from ./IntRegPrior.h:14:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/iostream:37:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/ios:215:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__locale:14:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/string:506:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/string_view:175:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/__string:57:
In file included from /Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/algorithm:643:
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1686:86: warning: destructor called on non-final 'ir::DynamicCoxPar' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
_LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_INLINE_VISIBILITY void destroy(pointer __p) {__p->~_Tp();}
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1578:21: note: in instantiation of member function 'std::allocator<ir::DynamicCoxPar>::destroy' requested here
__a.destroy(__p);
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1419:14: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<ir::DynamicCoxPar>>::__destroy<ir::DynamicCoxPar>' requested here
{__destroy(__has_destroy<allocator_type, _Tp*>(), __a, __p);}
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/vector:428:25: note: in instantiation of function template specialization 'std::allocator_traits<std::allocator<ir::DynamicCoxPar>>::destroy<ir::DynamicCoxPar>' requested here
__alloc_traits::destroy(__alloc(), _VSTD::__to_address(--__soon_to_be_end));
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/vector:371:29: note: in instantiation of member function 'std::__vector_base<ir::DynamicCoxPar, std::allocator<ir::DynamicCoxPar>>::__destruct_at_end' requested here
void clear() _NOEXCEPT {__destruct_at_end(__begin_);}
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/vector:465:9: note: in instantiation of member function 'std::__vector_base<ir::DynamicCoxPar, std::allocator<ir::DynamicCoxPar>>::clear' requested here
clear();
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/vector:497:5: note: in instantiation of member function 'std::__vector_base<ir::DynamicCoxPar, std::allocator<ir::DynamicCoxPar>>::~__vector_base' requested here
vector() _NOEXCEPT_(is_nothrow_default_constructible<allocator_type>::value)
^
./GibbsSampler.h:40:3: note: in instantiation of member function 'std::vector<ir::DynamicCoxPar>::vector' requested here
GibbsSampler(const boost::shared_ptr<M>& pm,
^
bayesCox.cpp:228:23: note: in instantiation of member function 'ir::GibbsSampler<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalProcessPrior>>>::GibbsSampler' requested here
GibbsSampler<M> gs(pm, p_iter[0]);
^
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/c++/v1/memory:1686:92: note: qualify call to silence this warning
_LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_INLINE_VISIBILITY void destroy(pointer __p) {__p->~_Tp();}
^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/core/checked_delete.hpp:36:5: warning: delete called on non-final 'ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
delete x;
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>>' requested here
boost::checked_delete( p );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:279:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>>' requested here
boost::detail::shared_count( p ).swap( pn );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:373:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>, ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>>' requested here
boost::detail::sp_pointer_construct( this, p, pn );
^
bayesCox.cpp:257:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>>::shared_ptr<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaPrior, ir::NormalInvGammaProcessPrior>>>' requested here
boost::shared_ptr<M> pm(new M(pd));
^
1 warning generated.
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/core/checked_delete.hpp:36:5: warning: delete called on non-final 'ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
delete x;
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior>>>' requested here
boost::checked_delete( p );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:279:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior>>>' requested here
boost::detail::shared_count( p ).swap( pn );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:373:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior>>, ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior>>>' requested here
boost::detail::sp_pointer_construct( this, p, pn );
^
bayesCox.cpp:292:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior>>>::shared_ptr<ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalProcessPrior>>>' requested here
boost::shared_ptr<M> pm(new M(pd));
^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/core/checked_delete.hpp:36:5: warning: delete called on non-final 'ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
delete x;
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior>>>' requested here
boost::checked_delete( p );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:279:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior>>>' requested here
boost::detail::shared_count( p ).swap( pn );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:373:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior>>, ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior>>>' requested here
boost::detail::sp_pointer_construct( this, p, pn );
^
bayesCox.cpp:324:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior>>>::shared_ptr<ir::DynamicCoxModel_v2<ir::CoxPrior<ir::ConstValuePrior, ir::NormalInvGammaProcessPrior>>>' requested here
boost::shared_ptr<M> pm(new M(pd));
^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/core/checked_delete.hpp:36:5: warning: delete called on non-final 'ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
delete x;
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>>' requested here
boost::checked_delete( p );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:279:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>>' requested here
boost::detail::shared_count( p ).swap( pn );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:373:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>, ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>>' requested here
boost::detail::sp_pointer_construct( this, p, pn );
^
bayesCox.cpp:359:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>>::shared_ptr<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalProcessPrior>>>' requested here
boost::shared_ptr<M> pm(new M(pd));
^
In file included from bayesCox.cpp:3:
In file included from ./TimeIndepCoxModel.h:17:
In file included from ./TimeIndepModel.h:15:
In file included from ./IntRegModel.h:18:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:17:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:27:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/sp_counted_impl.hpp:27:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/core/checked_delete.hpp:36:5: warning: delete called on non-final 'ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>' that has virtual functions but non-virtual destructor [-Wdelete-non-abstract-non-virtual-dtor]
delete x;
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/detail/shared_count.hpp:154:20: note: in instantiation of function template specialization 'boost::checked_delete<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>>' requested here
boost::checked_delete( p );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:279:5: note: in instantiation of function template specialization 'boost::detail::shared_count::shared_count<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>>' requested here
boost::detail::shared_count( p ).swap( pn );
^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include/boost/smart_ptr/shared_ptr.hpp:373:24: note: in instantiation of function template specialization 'boost::detail::sp_pointer_construct<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>, ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>>' requested here
boost::detail::sp_pointer_construct( this, p, pn );
^
bayesCox.cpp:392:28: note: in instantiation of function template specialization 'boost::shared_ptr<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>>::shared_ptr<ir::DynamicCoxModel<ir::CoxPrior<ir::GammaProcessPrior, ir::NormalInvGammaProcessPrior>>>' requested here
boost::shared_ptr<M> pm(new M(pd));
^
21 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o dynsurv.so IntRegPar.o arms.o bayesCox.o dynsurv_init.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.3/dynsurv.Rcheck/00LOCK-dynsurv/00new/dynsurv/libs
** generating debug symbols (dSYM)
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dynsurv)