- using R version 4.2.0 (2022-04-22)
- using platform: x86_64-apple-darwin17.0 (64-bit)
- using session charset: UTF-8
- checking for file ‘dmt/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘dmt’ version ‘0.8.20’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘dmt’ can be installed ... [6s/6s] OK
See the install log for details.
- checking installed package size ... OK
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking R files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [6s/6s] NOTE
calc.pcca: no visible global function definition for ‘cov’
calc.pfa: no visible global function definition for ‘cov’
compare.estimate.and.truth: no visible global function definition for
‘cor’
cost.W.exponential: no visible global function definition for ‘dexp’
cost7: no visible global function definition for ‘dexp’
drCCAcombine : reg_cca: no visible global function definition for ‘cov’
drCCAcombine : eigtest: no visible global function definition for ‘cov’
drCCAcombine : random: no visible binding for global variable ‘var’
generate.toydata: no visible global function definition for ‘rnorm’
generate.toydata: no visible global function definition for ‘rexp’
initialize2: no visible global function definition for ‘var’
initialize2: no visible global function definition for ‘cov’
optimize.parameters: no visible global function definition for ‘rnorm’
optimize.parameters: no visible global function definition for ‘sd’
optimize.parameters: no visible global function definition for ‘optim’
pfacost: no visible global function definition for ‘cov’
plotVar: no visible global function definition for ‘par’
plotVar: no visible global function definition for ‘lines’
ppca.calculate: no visible global function definition for ‘cov’
regCCA: no visible global function definition for ‘cov’
sharedVar : pwisepca: no visible global function definition for
‘prcomp’
solve.archambeau: no visible global function definition for ‘cov’
specificVar : withinpca: no visible global function definition for
‘prcomp’
specificVar : withinpca: no visible global function definition for
‘cov’
specificVar: no visible global function definition for ‘cov’
update.W.singledata: no visible global function definition for ‘optim’
wprior: no visible global function definition for ‘dexp’
Undefined global functions or variables:
cor cov dexp lines optim par prcomp rexp rnorm sd var
Consider adding
importFrom("graphics", "lines", "par")
importFrom("stats", "cor", "cov", "dexp", "optim", "prcomp", "rexp",
"rnorm", "sd", "var")
to your NAMESPACE file.
- checking Rd files ... [0s/0s] OK
- checking Rd metadata ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [2s/2s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes in ‘inst/doc’ ... OK
- checking running R code from vignettes ... [3s/3s] OK
‘dmt.Rnw’... [3s/3s] OK
- checking re-building of vignette outputs ... [5s/5s] OK
- checking PDF version of manual ... OK
- DONE
Status: 1 NOTE
- using check arguments '--no-clean-on-error '