• using R version 4.1.0 (2021-05-18)
  • using platform: x86_64-apple-darwin17.0 (64-bit)
  • using session charset: UTF-8
  • checking for file ‘dmt/DESCRIPTION’ ... OK
  • checking extension type ... Package
  • this is package ‘dmt’ version ‘0.8.20’
  • checking package namespace information ... OK
  • checking package dependencies ... OK
  • checking if this is a source package ... OK
  • checking if there is a namespace ... OK
  • checking for executable files ... OK
  • checking for hidden files and directories ... OK
  • checking for portable file names ... OK
  • checking for sufficient/correct file permissions ... OK
  • checking whether package ‘dmt’ can be installed ... [6s/8s] OK
  • checking installed package size ... OK
  • checking package directory ... OK
  • checking ‘build’ directory ... OK
  • checking DESCRIPTION meta-information ... OK
  • checking top-level files ... OK
  • checking for left-over files ... OK
  • checking index information ... OK
  • checking package subdirectories ... OK
  • checking R files for non-ASCII characters ... OK
  • checking R files for syntax errors ... OK
  • checking whether the package can be loaded ... OK
  • checking whether the package can be loaded with stated dependencies ... OK
  • checking whether the package can be unloaded cleanly ... OK
  • checking whether the namespace can be loaded with stated dependencies ... OK
  • checking whether the namespace can be unloaded cleanly ... OK
  • checking loading without being on the library search path ... OK
  • checking dependencies in R code ... OK
  • checking S3 generic/method consistency ... OK
  • checking replacement functions ... OK
  • checking foreign function calls ... OK
  • checking R code for possible problems ... [7s/9s] NOTE
    calc.pcca: no visible global function definition for ‘cov’
    calc.pfa: no visible global function definition for ‘cov’
    compare.estimate.and.truth: no visible global function definition for
      ‘cor’
    cost.W.exponential: no visible global function definition for ‘dexp’
    cost7: no visible global function definition for ‘dexp’
    drCCAcombine : reg_cca: no visible global function definition for ‘cov’
    drCCAcombine : eigtest: no visible global function definition for ‘cov’
    drCCAcombine : random: no visible binding for global variable ‘var’
    generate.toydata: no visible global function definition for ‘rnorm’
    generate.toydata: no visible global function definition for ‘rexp’
    initialize2: no visible global function definition for ‘var’
    initialize2: no visible global function definition for ‘cov’
    optimize.parameters: no visible global function definition for ‘rnorm’
    optimize.parameters: no visible global function definition for ‘sd’
    optimize.parameters: no visible global function definition for ‘optim’
    pfacost: no visible global function definition for ‘cov’
    plotVar: no visible global function definition for ‘par’
    plotVar: no visible global function definition for ‘lines’
    ppca.calculate: no visible global function definition for ‘cov’
    regCCA: no visible global function definition for ‘cov’
    sharedVar : pwisepca: no visible global function definition for
      ‘prcomp’
    solve.archambeau: no visible global function definition for ‘cov’
    specificVar : withinpca: no visible global function definition for
      ‘prcomp’
    specificVar : withinpca: no visible global function definition for
      ‘cov’
    specificVar: no visible global function definition for ‘cov’
    update.W.singledata: no visible global function definition for ‘optim’
    wprior: no visible global function definition for ‘dexp’
    Undefined global functions or variables:
      cor cov dexp lines optim par prcomp rexp rnorm sd var
    Consider adding
      importFrom("graphics", "lines", "par")
      importFrom("stats", "cor", "cov", "dexp", "optim", "prcomp", "rexp",
                 "rnorm", "sd", "var")
    to your NAMESPACE file.
  • checking Rd files ... [0s/1s] OK
  • checking Rd metadata ... OK
  • checking Rd cross-references ... OK
  • checking for missing documentation entries ... OK
  • checking for code/documentation mismatches ... OK
  • checking Rd \usage sections ... OK
  • checking Rd contents ... OK
  • checking for unstated dependencies in examples ... OK
  • checking contents of ‘data’ directory ... OK
  • checking data for non-ASCII characters ... OK
  • checking data for ASCII and uncompressed saves ... OK
  • checking sizes of PDF files under ‘inst/doc’ ... OK
  • checking installed files from ‘inst/doc’ ... OK
  • checking files in ‘vignettes’ ... OK
  • checking examples ... [2s/3s] OK
  • checking for unstated dependencies in vignettes ... OK
  • checking package vignettes in ‘inst/doc’ ... OK
  • checking running R code from vignettes ... [3s/4s] OK
      ‘dmt.Rnw’... [3s/4s] OK
  • checking re-building of vignette outputs ... [7s/12s] OK
  • checking PDF version of manual ... OK
  • DONE
    Status: 1 NOTE
  • using check arguments '--no-clean-on-error '