Install log for 'dgraphs'

* installing *source* package ‘dgraphs’ ...
** this is package ‘dgraphs’ version ‘0.4.1’
** package ‘dgraphs’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++ compiler: ‘Apple clang version 14.0.3 (clang-1403.0.22.14.1)’
using C++17
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c fermat_implicit.cpp -o fermat_implicit.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c fermat_knn.cpp -o fermat_knn.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c linf_simplex.cpp -o linf_simplex.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -ffp-contract=off -fno-fast-math -c quadform_geodesics_solver.cpp -o quadform_geodesics_solver.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -ffp-contract=off -fno-fast-math -c quadform_geodesics_solver_rcpp.cpp -o quadform_geodesics_solver_rcpp.o
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
  Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
        ^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
  Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
        ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
                        Index replacements = 0;
                              ^
In file included from RcppExports.cpp:4:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  int count = 0;
      ^
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c quadform_geodesics_methods.cpp -o quadform_geodesics_methods.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c quadform_geodesics_continuous.cpp -o quadform_geodesics_continuous.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c quadform_geodesics_boundary.cpp -o quadform_geodesics_boundary.o
5 warnings generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c quadform_geodesics_reference.cpp -o quadform_geodesics_reference.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c quadform_geodesics_mesh.cpp -o quadform_geodesics_mesh.o
In file included from quadform_geodesics_continuous.cpp:2:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:26:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
In file included from quadform_geodesics_continuous.cpp:2:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/Sparse:29:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseLU:35:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:78:9: warning: variable 'nsuper_et_post' set but not used [-Wunused-but-set-variable]
  Index nsuper_et_post = 0; // Number of relaxed snodes in postordered etree 
        ^
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h:79:9: warning: variable 'nsuper_et' set but not used [-Wunused-but-set-variable]
  Index nsuper_et = 0; // Number of relaxed snodes in the original etree 
        ^
In file included from quadform_geodesics_continuous.cpp:2:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:31:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/IterativeSolvers:46:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/IDRS.h:72:10: warning: variable 'replacements' set but not used [-Wunused-but-set-variable]
                        Index replacements = 0;
                              ^
In file included from quadform_geodesics_continuous.cpp:2:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigen.h:25:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/RcppEigenForward.h:37:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/SparseExtra:45:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/unsupported/Eigen/src/SparseExtra/MarketIO.h:246:7: warning: variable 'count' set but not used [-Wunused-but-set-variable]
  int count = 0;
      ^
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c quadform_geodesics_methods_rcpp.cpp -o quadform_geodesics_methods_rcpp.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c SEXP_cpp_conversion_utils.cpp -o SEXP_cpp_conversion_utils.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c Eigen_utils.cpp -o Eigen_utils.o
In file included from Eigen_utils.cpp:1:
In file included from ../inst/include/dgraphs/Eigen_utils.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c adaptive_radius_graph_ann.cpp -o adaptive_radius_graph_ann.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c bidirectional_dijkstra.cpp -o bidirectional_dijkstra.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c cpp_mstrees.cpp -o cpp_mstrees.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c dgraphs_init.cpp -o dgraphs_init.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c geometric_edge_pruning.cpp -o geometric_edge_pruning.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c geodesic_iknn_graphs.cpp -o geodesic_iknn_graphs.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c geodesic_stats.cpp -o geodesic_stats.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c geodesic_stats_r.cpp -o geodesic_stats_r.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c graph_core_endpoints.cpp -o graph_core_endpoints.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c graph_endpoint_geometry_rcpp.cpp -o graph_endpoint_geometry_rcpp.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c graph_endpoint_geometry_rcpp_wrappers.cpp -o graph_endpoint_geometry_rcpp_wrappers.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c graph_spectrum.cpp -o graph_spectrum.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c graph_conn_components.cpp -o graph_conn_components.o
In file included from graph_spectrum.cpp:1:
In file included from ../inst/include/dgraphs/Eigen_utils.h:9:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c graph_maximal_packing.cpp -o graph_maximal_packing.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c graph_maximal_packing_r.cpp -o graph_maximal_packing_r.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c graph_utils_native.cpp -o graph_utils_native.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c kNN.cpp -o kNN.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c knn_search_result_native.cpp -o knn_search_result_native.o
In file included from kNN.cpp:1:
In file included from ../inst/include/dgraphs/kNN.h:6:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c local_geodesic_pruning.cpp -o local_geodesic_pruning.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c mknn_graphs.cpp -o mknn_graphs.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c mst_completion_graphs.cpp -o mst_completion_graphs.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c mst_completion_graphs_r.cpp -o mst_completion_graphs_r.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c mstree_total_length.cpp -o mstree_total_length.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c path_grid.cpp -o path_grid.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c progress_utils.cpp -o progress_utils.o
In file included from mstree_total_length.cpp:3:
In file included from ../inst/include/dgraphs/kNN.h:6:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c pruning_long_edges.cpp -o pruning_long_edges.o
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c prune_long_edges.cpp -o prune_long_edges.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c set_wgraph.cpp -o set_wgraph.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c shortest_path_utils.cpp -o shortest_path_utils.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c sknn_graphs.cpp -o sknn_graphs.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c kernels.c -o kernels.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c iknn_graphs.cpp -o iknn_graphs.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c linf_simplex_knn.cpp -o linf_simplex_knn.o
5 warnings generated.
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c mstree.c -o mstree.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/ANN.cpp -o ANN/ANN.o
In file included from iknn_graphs.cpp:13:
In file included from ../inst/include/dgraphs/kNN.h:6:
In file included from /Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/SparseCore:61:
/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include/Eigen/src/SparseCore/TriangularSolver.h:273:13: warning: variable 'count' set but not used [-Wunused-but-set-variable]
      Index count = 0;
            ^
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/bd_fix_rad_search.cpp -o ANN/bd_fix_rad_search.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/bd_pr_search.cpp -o ANN/bd_pr_search.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/bd_search.cpp -o ANN/bd_search.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/bd_tree.cpp -o ANN/bd_tree.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/kd_dump.cpp -o ANN/kd_dump.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/kd_fix_rad_search.cpp -o ANN/kd_fix_rad_search.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/kd_pr_search.cpp -o ANN/kd_pr_search.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/kd_search.cpp -o ANN/kd_search.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/kd_split.cpp -o ANN/kd_split.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/kd_tree.cpp -o ANN/kd_tree.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I. -IANN -I../inst/include/dgraphs -I../inst/include -DR_NO_REMAP -D_Alignof=__alignof__ -DDLL_API= -DEIGEN_DONT_PARALLELIZE -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/BH/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/nloptr/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/Rcpp/include' -I'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.5/RcppEigen/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c ANN/kd_util.cpp -o ANN/kd_util.o
1 warning generated.
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o dgraphs.so RcppExports.o fermat_implicit.o fermat_knn.o linf_simplex.o quadform_geodesics_solver.o quadform_geodesics_solver_rcpp.o quadform_geodesics_methods.o quadform_geodesics_continuous.o quadform_geodesics_boundary.o quadform_geodesics_reference.o quadform_geodesics_mesh.o quadform_geodesics_methods_rcpp.o SEXP_cpp_conversion_utils.o Eigen_utils.o adaptive_radius_graph_ann.o bidirectional_dijkstra.o cpp_mstrees.o dgraphs_init.o geometric_edge_pruning.o geodesic_iknn_graphs.o geodesic_stats.o geodesic_stats_r.o graph_core_endpoints.o graph_endpoint_geometry_rcpp.o graph_endpoint_geometry_rcpp_wrappers.o graph_spectrum.o graph_conn_components.o graph_maximal_packing.o graph_maximal_packing_r.o graph_utils_native.o kNN.o knn_search_result_native.o local_geodesic_pruning.o mknn_graphs.o mst_completion_graphs.o mst_completion_graphs_r.o mstree_total_length.o path_grid.o progress_utils.o pruning_long_edges.o prune_long_edges.o set_wgraph.o shortest_path_utils.o sknn_graphs.o kernels.o iknn_graphs.o linf_simplex_knn.o mstree.o ANN/ANN.o ANN/bd_fix_rad_search.o ANN/bd_pr_search.o ANN/bd_search.o ANN/bd_tree.o ANN/kd_dump.o ANN/kd_fix_rad_search.o ANN/kd_pr_search.o ANN/kd_search.o ANN/kd_split.o ANN/kd_tree.o ANN/kd_util.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/14.2.0 -L/opt/gfortran/lib -lemutls_w -lheapt_w -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R
installing to /Volumes/Builds/packages/big-sur-x86_64/results/4.5/dgraphs.Rcheck/00LOCK-dgraphs/00new/dgraphs/libs
** generating debug symbols (dSYM)
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (dgraphs)